Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.3e-57 226.1 105 100.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 5.3e-24 114.4 62 87.1
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 3.6e-20 101.7 59 78.0
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 3.6e-20 101.7 59 78.0
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 3.6e-20 101.7 59 78.0
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 3.6e-20 101.7 59 78.0
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 3.6e-20 101.7 59 78.0
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 8.8e-19 97.1 59 74.6
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 1.2e-18 96.7 57 80.7
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-18 96.7 57 80.7
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 1.2e-18 96.7 57 80.7
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-17 91.7 57 77.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 6.3e-17 90.9 62 72.6
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.4e-16 89.7 62 71.0
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.1e-16 88.2 62 71.0
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.0e-16 87.4 62 69.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.7e-15 85.5 62 67.7
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.5e-15 84.7 59 67.8
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.1e-13 80.1 60 66.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 5.5e-13 77.8 60 63.3
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 5.5e-13 77.8 62 66.1
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 7.2e-13 77.4 63 63.5
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.6e-12 76.3 62 66.1
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 2.7e-12 75.5 58 69.0
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 2.7e-12 75.5 58 69.0
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 6.1e-12 74.3 62 62.9
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 4.0e-11 71.6 63 61.9
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 4.0e-11 71.6 62 61.3
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 4.0e-11 71.6 63 61.9
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 4.0e-11 71.6 63 61.9
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 4.0e-11 71.6 63 61.9
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 5.2e-11 71.2 64 60.9
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 5.2e-11 71.2 64 60.9
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 6.8e-11 70.9 62 59.7
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 8.8e-11 70.5 62 59.7
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 8.8e-11 70.5 62 59.7
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 3.4e-10 68.6 58 53.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-09 66.6 58 51.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-09 66.2 59 52.5
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.2e-09 65.9 52 63.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.8e-09 65.5 63 52.4
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.8e-09 65.5 63 50.8
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 4.9e-09 64.7 57 54.4
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 6.3e-09 64.3 55 50.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 8.3e-09 63.9 56 53.6
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.3e-09 63.9 57 56.1
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 1.4e-08 63.2 61 59.0
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-08 63.2 61 59.0
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-08 63.2 61 59.0
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 1.4e-08 63.2 61 59.0
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.4e-08 63.2 61 59.0
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.4e-08 62.4 52 53.8
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.4e-08 62.4 58 53.4
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.4e-08 62.4 58 53.4
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 2.4e-08 62.4 64 53.1
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.1e-08 61.6 59 52.5
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 5.4e-08 61.2 58 51.7
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 7.0e-08 60.8 57 54.4
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.2e-08 60.5 52 53.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 9.2e-08 60.5 54 55.6
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.2e-07 60.1 62 45.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.2e-07 60.1 63 49.2
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.2e-07 60.1 57 49.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-07 59.7 52 53.8
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.6e-07 59.7 52 53.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.0e-07 59.3 52 53.8
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.0e-07 59.3 63 50.8
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.0e-07 59.3 62 45.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.0e-07 59.3 59 47.5
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.7e-07 58.9 51 54.9
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.5e-07 58.5 58 50.0
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.5e-07 58.5 52 51.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.5e-07 58.2 52 53.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.5e-07 58.2 67 44.8
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.9e-07 57.8 60 48.3
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.9e-07 57.8 55 45.5
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.9e-07 57.8 59 50.8
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 5.9e-07 57.8 62 40.3
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 7.7e-07 57.4 61 54.1
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 7.7e-07 57.4 61 54.1
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 7.7e-07 57.4 58 51.7
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.0e-06 57.0 64 42.2
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.0e-06 57.0 52 55.8
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.0e-06 57.0 55 49.1
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.3e-06 56.6 58 48.3
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.3e-06 56.6 60 53.3
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.3e-06 56.6 59 49.2
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.7e-06 56.2 52 50.0
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.3e-06 55.8 53 52.8
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.5 52 53.8
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.5 63 44.4
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 3.8e-06 55.1 55 50.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.8e-06 55.1 56 50.0
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.8e-06 55.1 52 50.0
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.8e-06 55.1 55 43.6
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 3.8e-06 55.1 60 45.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.8e-06 55.1 52 51.9
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.0e-06 54.7 48 54.2
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.0e-06 54.7 68 47.1
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.0e-06 54.7 52 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.6e-06 53.9 55 45.5


User provided reference genes

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