Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.4e-53 211.5 110 100.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 2.7e-50 201.8 110 94.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 3.8e-49 198.0 110 91.8
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-49 197.6 110 92.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 6.6e-49 197.2 110 91.8
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 8.6e-49 196.8 110 91.8
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 8.6e-49 196.8 110 91.8
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-48 196.4 110 90.9
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.1e-48 196.4 110 91.8
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 110 91.8
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.5e-48 195.3 110 91.8
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.3e-48 194.9 110 90.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.2e-47 193.0 110 90.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 111 91.0
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 111 91.0
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 111 91.0
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.8e-47 191.8 110 90.9
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.6e-47 191.4 110 90.9
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 9.8e-45 183.3 111 86.5
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.5e-40 169.5 106 78.3
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.1e-39 165.6 103 79.6
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-36 155.2 100 79.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.7e-36 154.8 98 75.5
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 3.7e-36 154.8 107 72.0
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 4.9e-36 154.5 101 74.3
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.4e-36 154.1 107 71.0
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 6.4e-36 154.1 107 71.0
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 8.3e-36 153.7 81 93.8
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.3e-36 153.7 107 71.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-35 153.3 100 82.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.1e-35 153.3 100 78.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.4e-35 152.9 107 70.1
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.4e-35 152.1 100 82.0
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 72.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 3.2e-35 151.8 101 73.3
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 73.8
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 4.1e-35 151.4 105 73.3
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 4.1e-35 151.4 98 76.5
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 71.0
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 9.2e-35 150.2 105 75.2
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 9.2e-35 150.2 104 70.2
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.2e-35 150.2 107 69.2
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 69.2
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 68.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.7e-34 148.7 101 70.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 3.5e-34 148.3 107 69.2
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.5e-34 148.3 108 68.5
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 69.2
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 69.2
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 69.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 69.2
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 6.0e-34 147.5 108 63.9
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 67.3
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 6.0e-34 147.5 106 66.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 67.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 6.0e-34 147.5 106 69.8
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 70.1
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 6.0e-34 147.5 102 68.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 7.8e-34 147.1 108 63.9
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.8e-34 147.1 110 67.3
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.8e-34 147.1 107 71.0
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.8e-34 147.1 106 68.9
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 7.8e-34 147.1 107 70.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 7.8e-34 147.1 107 67.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 7.8e-34 147.1 110 67.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 67.3
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 67.3
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 67.3
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 67.3
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 67.3
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 68.9
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.0e-33 146.7 102 67.6
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 67.3
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 67.3
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 67.3
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 105 68.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 67.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 67.9
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 68.2
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 67.3
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 66.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 110 68.2
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.7e-33 146.0 110 67.3
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.7e-33 146.0 110 69.1
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.7e-33 146.0 106 68.9
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 66.7
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.0e-33 145.2 98 71.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 66.4
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 65.7
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 65.7
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 3.9e-33 144.8 107 68.2
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.9e-33 144.8 106 67.9
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.9e-33 144.8 98 71.4
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.9e-33 144.8 106 70.8
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.9e-33 144.8 107 70.1
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.6e-33 144.1 98 69.4
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 8.6e-33 143.7 110 63.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 66.4
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 66.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 8.6e-33 143.7 108 64.8
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 8.6e-33 143.7 108 64.8
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-32 143.3 83 90.4
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.1e-32 143.3 105 70.5
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.5e-32 142.9 106 64.2
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.5e-32 142.9 105 65.7
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.9e-32 142.5 106 67.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.9e-32 142.5 98 70.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.9e-32 142.5 97 73.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 67.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 67.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.3e-32 141.7 102 66.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.3e-32 141.7 107 65.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.3e-32 141.7 107 67.3
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.3e-32 141.4 105 66.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.3e-32 141.4 104 68.3
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.6e-32 141.0 107 65.4
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.6e-32 141.0 107 65.4
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 5.6e-32 141.0 105 65.7
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 7.3e-32 140.6 106 66.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 7.3e-32 140.6 106 65.1
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.3e-32 140.6 106 67.9
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 7.3e-32 140.6 108 66.7
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 9.5e-32 140.2 104 67.3
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.2e-31 139.8 107 66.4
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.6e-31 139.4 109 63.3
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 2.1e-31 139.0 106 67.0
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 4.7e-31 137.9 103 68.9
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.2e-31 137.5 102 65.7
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 6.2e-31 137.5 106 65.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 6.2e-31 137.5 104 67.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 8.1e-31 137.1 100 69.0
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.1e-30 136.7 103 68.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.8e-30 136.0 104 66.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.1e-30 135.2 98 66.3
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.0e-30 134.8 100 67.0
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.5e-29 132.9 102 64.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 4.4e-29 131.3 107 62.6
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 4.4e-29 131.3 107 62.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.1e-27 124.8 95 65.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.2e-27 123.6 107 61.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-23 112.8 87 66.7
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.8e-23 112.1 98 60.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.4e-22 109.0 92 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 6.8e-22 107.5 85 62.4
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.0e-21 105.9 92 62.0
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.9e-19 99.4 107 51.4
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.9e-19 99.4 85 61.2
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.5e-18 95.1 66 66.7
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.9e-17 91.7 75 62.7
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.6e-16 87.0 85 58.8
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-14 82.8 65 60.0
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 9.0e-14 80.5 51 70.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.2e-12 75.9 54 70.4
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 7.1e-11 70.9 54 68.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.2e-10 70.1 88 44.3
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.6e-10 69.7 54 66.7
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.7e-10 68.9 75 50.7
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.7e-10 68.9 54 63.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 7.8e-10 67.4 90 42.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.7e-09 66.2 110 40.0
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.1e-06 55.5 44 63.6
C03p16630 Brassica napus HOM05D004421 ORTHO05D005227 6.9e-06 54.3 83 45.8


User provided reference genes

Program Settings