Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 7.3e-62 240.4 118 100.0
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 1.9e-54 215.7 118 91.5
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 9.5e-54 213.4 118 91.5
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 2.1e-53 212.2 118 91.5
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 3.6e-53 211.5 117 88.0
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 4.7e-53 211.1 118 89.8
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 4.7e-53 211.1 118 89.8
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 6.2e-53 210.7 118 91.5
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 8.0e-53 210.3 118 89.8
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 1.0e-52 209.9 117 88.9
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 1.8e-52 209.1 118 89.8
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 1.8e-52 209.1 118 89.8
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 2.3e-52 208.8 118 89.0
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 4.6e-48 194.5 104 88.5
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 1.7e-47 192.6 108 87.0
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 2.4e-41 172.2 104 80.8
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 4.1e-33 144.8 120 60.8
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 1.2e-32 143.3 92 75.0
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 2.7e-32 142.1 134 53.0
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.7e-32 142.1 86 77.9
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.5e-32 141.7 91 74.7
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 6.0e-32 141.0 95 71.6
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.0e-31 140.2 86 76.7
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 1.7e-31 139.4 131 59.5
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.3e-31 139.0 91 72.5
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 2.3e-31 139.0 123 61.0
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 2.3e-31 139.0 126 60.3
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 3.0e-31 138.7 99 66.7
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 3.0e-31 138.7 99 66.7
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 3.0e-31 138.7 97 68.0
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 3.0e-31 138.7 123 56.9
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 3.9e-31 138.3 132 58.3
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 3.9e-31 138.3 132 56.1
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 5.1e-31 137.9 126 57.1
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 8.6e-31 137.1 91 72.5
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 8.6e-31 137.1 105 62.9
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 1.1e-30 136.7 91 71.4
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 1.1e-30 136.7 124 58.1
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.5e-30 136.3 134 51.5
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 1.5e-30 136.3 128 61.7
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 1.5e-30 136.3 95 69.5
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 1.9e-30 136.0 99 66.7
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.9e-30 136.0 94 69.1
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 3.3e-30 135.2 133 50.4
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 3.3e-30 135.2 115 60.9
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 3.3e-30 135.2 101 65.3
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 7.3e-30 134.0 89 68.5
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 9.6e-30 133.7 75 82.7
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 9.6e-30 133.7 72 84.7
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 1.2e-29 133.3 91 68.1
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 1.2e-29 133.3 122 58.2
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.6e-29 132.9 93 73.1
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 2.1e-29 132.5 126 58.7
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 2.1e-29 132.5 122 59.8
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 2.1e-29 132.5 95 70.5
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.8e-29 132.1 75 81.3
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 2.8e-29 132.1 71 85.9
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 6.2e-29 131.0 126 57.9
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 6.2e-29 131.0 73 82.2
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 6.2e-29 131.0 80 73.8
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 1.1e-28 130.2 74 78.4
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.1e-28 130.2 124 54.0
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.1e-28 130.2 89 68.5
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 1.4e-28 129.8 97 62.9
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.4e-28 129.8 129 58.1
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 1.8e-28 129.4 75 78.7
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 1.8e-28 129.4 71 83.1
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 2.4e-28 129.0 80 77.5
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 4.0e-28 128.3 123 53.7
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 5.2e-28 127.9 85 69.4
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 5.2e-28 127.9 74 78.4
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 6.9e-28 127.5 74 78.4
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 6.9e-28 127.5 126 54.0
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.2e-27 126.7 91 69.2
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.5e-27 126.3 74 79.7
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 1.5e-27 126.3 74 78.4
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.5e-27 126.3 74 77.0
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 1.5e-27 126.3 74 77.0
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 2.0e-27 125.9 89 66.3
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 2.6e-27 125.6 90 70.0
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 4.4e-27 124.8 74 74.3
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 5.8e-27 124.4 126 53.2
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 7.6e-27 124.0 122 50.8
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.9e-27 123.6 91 68.1
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 9.9e-27 123.6 74 75.7
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 1.3e-26 123.2 126 53.2
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 1.3e-26 123.2 70 77.1
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.2e-26 122.5 123 58.5
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 2.9e-26 122.1 90 67.8
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.1e-25 120.2 74 75.7
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 2.4e-25 119.0 92 63.0
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 3.2e-25 118.6 145 48.3
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 6.0e-24 114.4 74 70.3
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 1.9e-22 109.4 112 52.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.3e-22 107.5 62 77.4
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 2.1e-21 105.9 72 62.5
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 2.1e-21 105.9 81 61.7
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 2.8e-21 105.5 72 63.9
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 1.1e-20 103.6 98 50.0
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 1.2e-19 100.1 62 72.6
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 3.4e-19 98.6 103 55.3
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 4.5e-19 98.2 56 76.8
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 4.9e-18 94.7 64 57.8
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 7.1e-17 90.9 94 42.6
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 1.2e-16 90.1 70 48.6
BNapus_Darmor_BZH_scaffold_38p01260 Brassica napus HOM05D004779 ORTHO05D005737 1.6e-13 79.7 49 79.6
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.5e-11 73.2 95 49.5
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 4.9e-10 68.2 39 74.4
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.9e-09 66.2 92 46.7
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 7.1e-09 64.3 37 78.4
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 4.6e-08 61.6 40 75.0
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 1.3e-07 60.1 83 41.0
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 1.8e-07 59.7 84 40.5
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 6.7e-07 57.8 35 74.3
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 7.4e-06 54.3 54 51.9


User provided reference genes

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