Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.0e-61 240.0 128 100.0
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.3e-50 201.1 137 82.5
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 5.5e-47 191.0 131 76.3
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 1.8e-45 186.0 136 79.4
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 3.0e-45 185.3 137 80.3
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.7e-43 178.3 133 78.9
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 1.8e-34 149.4 129 65.9
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 2.4e-34 149.1 130 67.7
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 3.1e-34 148.7 129 65.9
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.0e-33 146.0 130 66.9
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 5.9e-33 144.4 131 69.5
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 4.2e-31 138.3 129 62.8
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.2e-30 136.7 132 62.9
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 4.7e-30 134.8 135 62.2
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 8.8e-29 130.6 131 57.3
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 4.4e-28 128.3 128 62.5
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.7e-28 127.9 130 61.5
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.7e-27 126.3 127 59.8
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.8e-27 125.6 131 59.5
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.1e-26 123.6 131 57.3
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.7e-25 117.5 105 63.8
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-22 110.2 130 56.9
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.0e-21 107.1 133 54.1
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.0e-21 107.1 133 54.1
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.0e-21 107.1 133 54.1
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 4.0e-21 105.1 135 54.1
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 9.7e-20 100.5 135 52.6
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 3.7e-19 98.6 134 47.8
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 6.8e-13 77.8 133 42.1
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.7e-11 73.2 129 39.5
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 2.8e-11 72.4 139 42.4
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.8e-11 71.6 127 37.8
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 1.8e-10 69.7 122 43.4
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 5.4e-10 68.2 134 41.8
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 7.0e-10 67.8 145 39.3
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 7.0e-10 67.8 136 41.9
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 1.2e-09 67.0 133 41.4
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.2e-09 67.0 113 41.6
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.2e-09 67.0 138 40.6
BcaB01g04337 Brassica carinata HOM05D009587 ORTHO05D004912 1.6e-09 66.6 81 51.9
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.0e-09 66.2 98 49.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.9e-09 64.7 128 36.7
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.0e-08 63.9 120 41.7
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 2.9e-08 62.4 116 37.1
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 3.8e-08 62.0 111 43.2
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.0e-08 61.6 105 46.7
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 5.0e-08 61.6 105 46.7
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 6.5e-08 61.2 127 37.8
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 6.5e-08 61.2 103 44.7
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 6.5e-08 61.2 98 46.9
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 6.5e-08 61.2 127 38.6
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 6.5e-08 61.2 127 38.6
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 6.5e-08 61.2 113 39.8
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.5e-08 60.8 118 39.0
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.5e-08 60.8 118 39.0
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 8.5e-08 60.8 118 38.1
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 8.5e-08 60.8 117 39.3
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 1.5e-07 60.1 118 37.3
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.5e-07 60.1 121 37.2
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 3.2e-07 58.9 127 37.8
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 3.2e-07 58.9 96 44.8
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 4.2e-07 58.5 129 38.8
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.2e-07 58.5 124 37.1
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 5.5e-07 58.2 120 39.2
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 5.5e-07 58.2 122 41.8
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 5.5e-07 58.2 115 40.9
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 7.2e-07 57.8 110 39.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 7.2e-07 57.8 129 38.8
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 9.4e-07 57.4 100 36.0
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 9.4e-07 57.4 124 37.1
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 9.4e-07 57.4 116 37.1
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.2e-06 57.0 100 44.0
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.2e-06 57.0 124 37.1
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 1.2e-06 57.0 119 39.5
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.6e-06 56.6 126 36.5
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.1e-06 56.2 107 42.1
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.1e-06 56.2 124 36.3
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.1e-06 56.2 102 40.2
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 2.1e-06 56.2 130 34.6
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 4.7e-06 55.1 110 39.1
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 4.7e-06 55.1 124 36.3
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 4.7e-06 55.1 92 42.4
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 6.1e-06 54.7 86 41.9
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 6.1e-06 54.7 121 43.0
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 8.0e-06 54.3 132 37.1


User provided reference genes

Program Settings