Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.0e-80 301.6 135 100.0
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.1e-77 293.1 135 96.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.8e-77 292.4 135 96.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.8e-77 292.4 135 96.3
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.4e-77 292.0 135 95.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 3.1e-77 291.6 135 96.3
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 4.1e-77 291.2 135 95.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-76 289.3 135 95.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-76 289.3 135 95.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.2e-74 281.6 135 93.3
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 9.5e-74 280.0 135 92.6
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-73 279.3 136 93.4
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.0e-72 275.0 136 91.2
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.0e-72 275.0 136 91.2
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.0e-71 272.3 135 90.4
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 2.6e-71 271.9 142 87.3
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.8e-69 265.8 135 86.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 4.9e-62 241.1 135 76.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 76.3
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.8e-61 239.2 135 75.6
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 4.1e-61 238.0 135 74.8
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 4.1e-61 238.0 135 75.6
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 4.1e-61 238.0 135 75.6
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.2e-61 236.9 135 74.1
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.7e-60 235.3 135 74.8
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 75.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 74.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.0e-59 233.4 135 74.8
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 3.9e-59 231.5 147 70.1
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 3.9e-59 231.5 135 75.6
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 73.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.5e-58 229.6 135 72.6
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.9e-58 229.2 134 72.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 72.6
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 7.3e-58 227.3 148 67.6
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 71.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 9.5e-58 226.9 133 71.4
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 9.5e-58 226.9 123 80.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.6e-57 226.1 148 66.9
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.6e-57 226.1 135 71.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 71.9
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 72.6
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.7e-57 224.6 137 73.7
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.7e-57 224.6 137 73.7
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 6.2e-57 224.2 147 67.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.2e-57 224.2 137 73.7
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.2e-57 224.2 135 71.1
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 8.0e-57 223.8 150 67.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 71.1
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 71.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.4e-56 223.0 150 64.7
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.3e-56 222.2 159 62.3
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 123 78.9
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 3.1e-56 221.9 145 64.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 69.6
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 5.2e-56 221.1 123 74.8
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 6.8e-56 220.7 135 71.1
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 6.8e-56 220.7 148 64.9
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 8.9e-56 220.3 135 71.1
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 8.9e-56 220.3 123 78.0
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 8.9e-56 220.3 123 78.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.9e-56 220.3 152 64.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-55 219.9 146 65.8
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 3.4e-55 218.4 130 70.8
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.4e-55 218.0 142 66.9
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 7.5e-55 217.2 159 57.9
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 9.8e-55 216.9 123 74.8
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 9.8e-55 216.9 133 69.9
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.2e-54 215.7 153 62.1
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 3.7e-54 214.9 149 63.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.7e-54 214.9 133 71.4
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 3.7e-54 214.9 135 69.6
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.9e-54 214.5 120 71.7
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.9e-54 214.5 132 69.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.4e-54 214.2 130 70.8
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.4e-54 214.2 133 71.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 6.4e-54 214.2 144 65.3
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.1e-53 213.4 135 69.6
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.9e-53 212.6 149 61.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 3.2e-53 211.8 133 67.7
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.1e-53 211.5 144 62.5
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.1e-53 211.5 131 69.5
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 5.4e-53 211.1 122 72.1
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.4e-53 211.1 133 68.4
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.2e-52 209.9 144 61.8
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.2e-52 209.9 132 67.4
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.6e-52 209.5 122 72.1
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 2.0e-52 209.1 159 56.6
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.0e-52 209.1 147 61.9
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.5e-52 208.4 127 69.3
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.5e-52 208.4 145 64.1
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 4.6e-52 208.0 123 70.7
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.8e-52 207.2 153 60.1
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.3e-51 206.5 123 68.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 3.0e-51 205.3 132 69.7
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 6.6e-51 204.1 126 66.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 6.6e-51 204.1 126 66.7
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.5e-50 203.0 122 68.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.2e-49 199.9 138 63.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 8.1e-49 197.2 133 65.4
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.8e-48 196.1 120 67.5
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 6.8e-48 194.1 135 65.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.0e-47 192.6 124 65.3
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 5.8e-47 191.0 130 66.9
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 8.3e-46 187.2 113 68.1
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 8.3e-46 187.2 113 68.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.9e-45 186.0 159 54.7
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.9e-45 186.0 130 63.1
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.2e-44 183.3 155 53.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 8.1e-41 170.6 123 60.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 8.9e-40 167.2 174 46.6
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.0e-39 166.0 106 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 8.4e-38 160.6 117 57.3
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 4.1e-37 158.3 136 52.9
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.6e-36 156.4 124 56.5
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.8e-33 145.6 136 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.8e-31 137.9 144 45.8
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.5e-26 123.2 84 61.9
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.9e-26 122.9 72 70.8
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.0e-23 112.8 59 81.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 3.4e-23 112.1 58 79.3
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.6e-20 103.2 135 46.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.1e-16 89.0 114 42.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.0e-16 88.6 57 64.9
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 5.3e-16 88.2 105 43.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.0e-15 86.3 81 46.9
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.7e-14 83.2 80 46.2
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-14 82.8 80 46.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.9e-13 79.7 74 50.0
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.3e-11 73.6 111 36.9
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.0e-11 72.4 69 47.8
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.9e-11 72.0 40 72.5
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.9e-11 72.0 75 45.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.1e-10 70.5 102 37.3
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.6e-09 66.6 49 57.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.1e-09 66.2 64 51.6
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-09 64.3 68 48.5
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-09 64.3 63 52.4
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-09 64.3 63 52.4


User provided reference genes

Program Settings