Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 4.5e-71 271.2 138 100.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 2.2e-65 252.3 138 94.2
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.4e-64 249.6 138 94.2
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 6.9e-64 247.3 138 92.8
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 6.9e-64 247.3 138 92.8
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 6.9e-64 247.3 138 92.8
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 3.4e-63 245.0 138 92.8
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 5.9e-63 244.2 138 91.3
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.3e-62 243.0 138 91.3
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 2.2e-62 242.3 138 91.3
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 6.5e-62 240.7 138 92.0
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 1.2e-60 236.5 138 89.1
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 2.7e-60 235.3 138 89.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 4.8e-57 224.6 137 85.4
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 2.0e-55 219.2 134 85.1
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.1e-48 196.8 137 75.2
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 1.1e-48 196.8 133 75.2
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.4e-48 195.7 137 74.5
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.1e-48 194.9 137 74.5
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.1e-48 193.7 137 73.7
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 2.0e-47 192.6 137 73.7
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 3.5e-47 191.8 137 73.7
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 3.5e-47 191.8 137 73.0
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 7.7e-47 190.7 137 73.7
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 7.7e-47 190.7 137 72.3
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 7.7e-47 190.7 137 73.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.7e-46 189.5 137 72.3
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 2.9e-46 188.7 137 73.0
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.9e-46 188.7 137 71.5
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.0e-46 188.0 137 72.3
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 5.0e-46 188.0 137 73.0
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 6.5e-46 187.6 141 71.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 8.5e-46 187.2 135 71.9
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 8.5e-46 187.2 137 70.8
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 8.5e-46 187.2 137 71.5
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.1e-45 186.8 135 72.6
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.1e-45 186.8 138 71.7
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 1.5e-45 186.4 135 71.1
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.5e-45 186.4 137 71.5
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.5e-45 186.4 137 71.5
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.9e-45 186.0 135 71.9
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 2.5e-45 185.7 135 71.1
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 3.2e-45 185.3 137 71.5
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 3.2e-45 185.3 136 71.3
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 4.2e-45 184.9 137 71.5
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 4.2e-45 184.9 137 73.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 4.2e-45 184.9 137 70.1
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 5.5e-45 184.5 135 71.9
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.5e-45 184.5 137 70.8
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 7.2e-45 184.1 114 78.9
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.6e-44 183.0 116 79.3
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.6e-44 183.0 116 79.3
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.6e-44 183.0 132 70.5
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 1.6e-44 183.0 137 71.5
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 2.1e-44 182.6 133 69.9
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 2.1e-44 182.6 137 70.8
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 2.1e-44 182.6 137 68.6
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.1e-44 182.6 137 70.1
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.1e-44 182.6 137 69.3
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 4.7e-44 181.4 113 79.6
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 4.7e-44 181.4 108 83.3
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 6.1e-44 181.0 131 69.5
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.1e-44 181.0 137 68.6
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 6.1e-44 181.0 133 72.9
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 8.0e-44 180.6 137 68.6
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 8.0e-44 180.6 137 67.9
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 8.0e-44 180.6 137 68.6
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 8.0e-44 180.6 137 70.1
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 2.3e-43 179.1 110 81.8
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 2.3e-43 179.1 110 81.8
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.0e-43 178.7 137 70.1
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 3.0e-43 178.7 137 70.1
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 3.0e-43 178.7 136 69.1
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 4.0e-43 178.3 137 67.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 5.2e-43 177.9 112 79.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.5e-42 176.4 141 70.2
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 2.0e-42 176.0 140 67.1
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 2.0e-42 176.0 136 68.4
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 2.0e-42 176.0 114 77.2
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.0e-42 176.0 108 81.5
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 7.5e-42 174.1 135 68.1
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.5e-42 174.1 140 68.6
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 9.8e-42 173.7 137 69.3
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.7e-41 172.9 110 78.2
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 6.3e-41 171.0 110 79.1
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 1.1e-40 170.2 164 59.8
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 4.1e-40 168.3 110 79.1
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 1.2e-39 166.8 141 64.5
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.6e-39 166.4 167 56.3
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 5.9e-39 164.5 140 62.9
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 7.7e-39 164.1 140 64.3
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 1.0e-38 163.7 118 70.3
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.0e-38 163.7 137 61.3
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.2e-38 162.5 167 55.7
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 2.2e-38 162.5 137 60.6
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.9e-38 162.2 151 60.3
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 8.5e-38 160.6 112 69.6
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 9.4e-37 157.1 108 75.9
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.2e-36 156.8 113 68.1
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.6e-36 156.4 109 76.1
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 8.0e-36 154.1 134 62.7
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.0e-35 152.1 123 64.2
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 2.0e-34 149.4 109 67.0
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 1.3e-33 146.7 104 69.2
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.8e-33 145.6 128 63.3
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.8e-32 142.9 137 57.7
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 3.1e-32 142.1 136 65.4
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 7.7e-31 137.5 106 67.0
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-30 136.3 150 52.0
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.1e-29 133.7 180 45.0
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-29 132.1 104 62.5
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 3.0e-27 125.6 110 60.9
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 8.9e-27 124.0 75 81.3
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 3.5e-23 112.1 104 53.8
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.9e-22 109.0 102 57.8
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 4.3e-21 105.1 61 80.3
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 3.6e-20 102.1 98 51.0
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 3.1e-19 99.0 112 47.3
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 6.4e-17 91.3 112 42.9
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 8.3e-17 90.9 52 88.5
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 8.3e-17 90.9 52 88.5
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.4e-16 89.4 102 43.1
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.4e-16 89.4 102 43.1
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 3.2e-16 89.0 107 44.9
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 2.5e-13 79.3 50 84.0
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 3.6e-12 75.5 54 74.1
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 6.8e-11 71.2 92 44.6
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.7e-07 59.3 34 79.4
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 6.0e-07 58.2 34 79.4
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 7.8e-07 57.8 33 93.9


User provided reference genes

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