Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 6.9e-75 283.9 142 100.0
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.5e-61 239.6 144 86.1
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.5e-56 222.2 147 79.6
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.5e-56 222.2 147 79.6
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.1e-55 219.2 146 82.9
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 7.9e-55 217.2 149 78.5
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.3e-54 215.7 146 80.1
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 5.9e-50 201.1 128 82.8
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 2.2e-49 199.1 149 74.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 8.5e-49 197.2 149 74.5
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 3.2e-48 195.3 149 73.2
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 7.2e-48 194.1 150 70.7
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.4e-46 189.9 143 76.9
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.4e-43 179.9 125 77.6
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.0e-42 176.0 142 66.2
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 2.6e-42 175.6 142 66.2
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.7e-41 172.9 145 65.5
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.7e-41 172.9 145 65.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 5.0e-41 171.4 146 65.1
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.1e-40 170.2 149 65.1
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.4e-40 169.9 145 62.8
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.4e-40 169.9 147 64.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.4e-40 169.9 145 64.1
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.4e-40 169.9 142 66.9
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 4.2e-40 168.3 145 64.1
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 9.4e-40 167.2 143 66.4
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.2e-39 166.8 142 66.2
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.6e-39 166.4 142 66.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.1e-39 166.0 144 63.9
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 4.7e-39 164.9 142 64.8
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.9e-39 164.1 145 60.7
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 7.9e-39 164.1 142 62.0
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.0e-38 163.7 93 88.2
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.4e-38 163.3 142 62.0
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 2.3e-38 162.5 144 63.2
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 3.9e-38 161.8 151 61.6
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.9e-38 161.8 144 63.2
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 8.8e-38 160.6 143 62.2
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.1e-37 160.2 147 61.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.1e-37 160.2 147 61.9
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.1e-37 160.2 144 62.5
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.1e-37 160.2 142 64.1
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.5e-37 159.8 143 62.9
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 4.4e-37 158.3 142 61.3
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 5.7e-37 157.9 142 61.3
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 7.4e-37 157.5 143 61.5
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.3e-36 156.8 142 62.7
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.3e-36 156.8 146 61.6
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.7e-36 156.4 143 60.8
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.2e-36 156.0 145 60.7
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.7e-36 155.2 149 62.4
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 6.3e-36 154.5 141 63.1
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.2e-36 154.1 143 60.8
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 8.2e-36 154.1 145 59.3
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-35 153.7 144 59.0
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-35 153.7 144 59.0
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 1.1e-35 153.7 144 61.8
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.4e-35 153.3 143 60.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.8e-35 152.9 141 62.4
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 1.8e-35 152.9 143 57.3
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.8e-35 152.9 147 61.2
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 2.4e-35 152.5 144 61.1
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 3.1e-35 152.1 145 61.4
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.1e-35 152.1 143 60.1
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.3e-35 151.4 128 64.1
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 1.2e-34 150.2 144 60.4
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.2e-34 150.2 144 58.3
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 2.0e-34 149.4 142 58.5
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 2.6e-34 149.1 147 59.2
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 3.5e-34 148.7 123 65.0
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 4.5e-34 148.3 143 58.0
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 7.7e-34 147.5 143 60.1
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 7.7e-34 147.5 141 61.0
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 7.7e-34 147.5 144 59.0
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.3e-33 146.7 144 59.0
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 1.3e-33 146.7 143 58.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.7e-33 146.4 143 60.8
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.9e-33 145.6 128 62.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.9e-33 145.6 147 55.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 2.9e-33 145.6 143 56.6
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.8e-33 145.2 144 58.3
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 3.8e-33 145.2 147 57.8
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 8.5e-33 144.1 135 57.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.9e-32 142.9 100 81.0
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.9e-32 142.9 146 54.8
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.9e-32 142.9 147 59.2
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.5e-32 142.5 175 49.1
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.2e-32 141.7 144 59.0
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 4.2e-32 141.7 135 60.7
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 5.5e-32 141.4 139 56.8
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 7.2e-32 141.0 134 58.2
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 9.4e-32 140.6 142 56.3
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.2e-31 140.2 143 55.2
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.2e-31 140.2 143 55.2
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 143 55.2
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 146 54.1
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 143 55.2
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 3.6e-31 138.7 140 53.6
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.7e-31 138.3 140 57.1
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.7e-31 138.3 100 79.0
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 4.7e-31 138.3 141 55.3
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 4.7e-31 138.3 146 55.5
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 6.1e-31 137.9 133 60.2
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 6.1e-31 137.9 143 58.7
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 8.0e-31 137.5 129 57.4
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.0e-30 137.1 146 54.8
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.0e-30 137.1 143 56.6
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.8e-30 136.3 137 56.2
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.3e-30 136.0 133 56.4
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.0e-30 135.6 146 52.7
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.2e-30 134.8 132 58.3
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 8.8e-30 134.0 124 60.5
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 1.3e-28 130.2 122 60.7
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.4e-27 126.7 123 53.7
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.0e-26 122.9 146 51.4
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 3.8e-25 118.6 89 69.7
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 1.5e-24 116.7 120 55.0
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 4.7e-23 111.7 131 47.3
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 6.1e-23 111.3 132 48.5
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.0e-22 109.0 122 50.8
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 4.0e-22 108.6 126 50.8
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.2e-21 107.1 135 51.9
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 4.4e-21 105.1 128 46.1
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 5.0e-17 91.7 153 43.1
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.5e-16 90.1 129 49.6
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 2.8e-15 85.9 97 54.6
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-13 80.1 51 78.4
BolC9t57846H Brassica oleracea HOM05D005924 ORTHO05D007290 2.0e-13 79.7 62 72.6
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.6e-13 79.3 94 48.9
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 7.5e-13 77.8 62 71.0
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 5.0e-09 65.1 83 47.0
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 6.6e-09 64.7 107 40.2
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 1.6e-07 60.1 126 35.7
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 4.7e-07 58.5 91 42.9
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 3.0e-06 55.8 54 48.1


User provided reference genes

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