Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 7.6e-29 131.0 145 100.0
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 6.0e-26 121.3 145 91.7
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 3.9e-25 118.6 145 93.8
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 3.3e-24 115.5 145 91.0
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 7.4e-24 114.4 145 84.8
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 9.6e-24 114.0 145 89.7
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 9.6e-24 114.0 145 89.7
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 1.3e-23 113.6 145 89.7
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.3e-23 113.6 145 91.0
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 4.8e-23 111.7 63 90.5
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 4.5e-21 105.1 64 79.7
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 3.9e-17 92.0 58 82.8
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.1e-16 90.5 66 75.8
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.3e-16 89.0 60 71.7
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 5.7e-16 88.2 61 72.1
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 9.7e-16 87.4 71 70.4
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 9.7e-16 87.4 56 75.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 9.7e-16 87.4 72 68.1
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 9.7e-16 87.4 55 80.0
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.3e-15 87.0 72 68.1
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.6e-15 86.7 61 67.2
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 1.6e-15 86.7 59 71.2
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.6e-15 86.7 62 74.2
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.6e-15 86.7 56 76.8
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.6e-15 86.7 60 76.7
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.2e-15 86.3 53 81.1
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 2.8e-15 85.9 72 66.7
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 2.8e-15 85.9 72 66.7
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 3.7e-15 85.5 62 72.6
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.7e-15 85.5 56 75.0
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 4.8e-15 85.1 62 74.2
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 4.8e-15 85.1 55 74.5
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 6.3e-15 84.7 53 81.1
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 6.3e-15 84.7 53 81.1
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 6.3e-15 84.7 62 72.6
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 8.2e-15 84.3 60 73.3
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 8.2e-15 84.3 63 68.3
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.1e-14 84.0 60 71.7
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.4e-14 83.6 59 74.6
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 1.8e-14 83.2 57 78.9
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.4e-14 82.8 55 74.5
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 3.1e-14 82.4 68 67.6
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 3.1e-14 82.4 59 71.2
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 4.1e-14 82.0 54 74.1
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 5.3e-14 81.6 58 67.2
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.3e-14 81.6 58 67.2
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.3e-14 81.6 58 67.2
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 5.3e-14 81.6 65 66.2
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 6.9e-14 81.3 58 69.0
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 6.9e-14 81.3 53 75.5
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 6.9e-14 81.3 62 62.9
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 9.0e-14 80.9 71 63.4
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 9.0e-14 80.9 56 73.2
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.2e-13 80.5 59 69.5
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.2e-13 80.5 58 65.5
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 1.2e-13 80.5 59 66.1
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 1.5e-13 80.1 58 70.7
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 2.0e-13 79.7 66 66.7
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 2.0e-13 79.7 66 66.7
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 2.0e-13 79.7 64 67.2
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.6e-13 79.3 65 64.6
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 3.4e-13 79.0 61 63.9
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 3.4e-13 79.0 54 72.2
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.4e-13 79.0 59 71.2
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 4.5e-13 78.6 67 67.2
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 5.9e-13 78.2 66 69.7
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 5.9e-13 78.2 46 82.6
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.0e-12 77.4 53 75.5
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 1.0e-12 77.4 56 66.1
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.0e-12 77.4 51 74.5
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.3e-12 77.0 55 70.9
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 2.9e-12 75.9 53 77.4
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.9e-12 75.9 61 65.6
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 8.5e-12 74.3 54 72.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.1e-11 73.9 53 69.8
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.4e-11 73.6 64 68.8
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.9e-11 73.2 48 68.8
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 1.9e-11 73.2 55 61.8
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.5e-11 72.8 50 76.0
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 3.2e-11 72.4 57 63.2
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.2e-11 72.4 60 61.7
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 5.5e-11 71.6 56 71.4
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 5.5e-11 71.6 70 60.0
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 7.2e-11 71.2 48 64.6
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 9.4e-11 70.9 52 71.2
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 1.2e-10 70.5 54 72.2
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 3.6e-10 68.9 60 61.7
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 3.6e-10 68.9 61 63.9
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.8e-09 66.6 41 75.6
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 8.8e-09 64.3 48 70.8
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 8.8e-09 64.3 49 71.4
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 1.1e-08 63.9 53 62.3
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 1.1e-08 63.9 48 56.2
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.5e-08 63.5 44 72.7
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 5.7e-08 61.6 52 59.6
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 7.4e-08 61.2 43 74.4
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 3.1e-06 55.8 59 44.1
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 4.1e-06 55.5 44 68.2
SMO164G0043 Selaginella moellendorffii HOM05D007144 ORTHO05D008709 5.3e-06 55.1 53 50.9
Pp3c2_27120 Physcomitrium patens HOM05D007144 ORTHO05D008709 6.9e-06 54.7 43 58.1


User provided reference genes

Program Settings