Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 6.1e-82 307.4 148 100.0
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 9.7e-64 246.9 143 83.9
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 2.2e-63 245.7 142 83.1
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 3.7e-63 245.0 142 81.0
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 2.4e-62 242.3 142 82.4
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 7.7e-61 237.3 142 79.6
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 9.4e-59 230.3 137 81.0
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 1.8e-57 226.1 146 78.1
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 5.2e-57 224.6 146 76.7
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 2.0e-56 222.6 145 77.2
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 2.6e-56 222.2 137 78.1
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 5.7e-56 221.1 137 77.4
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 3.7e-55 218.4 137 75.9
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 4.8e-55 218.0 146 75.3
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 1.2e-48 196.8 119 79.0
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 6.4e-31 137.9 145 49.7
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 9.2e-30 134.0 145 49.7
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 9.2e-30 134.0 145 49.7
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 2.0e-29 132.9 146 50.7
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 6.0e-29 131.3 81 79.0
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 1.0e-28 130.6 81 79.0
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 1.0e-28 130.6 81 79.0
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 1.3e-28 130.2 144 51.4
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 1.9e-27 126.3 143 49.7
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 2.1e-26 122.9 148 44.6
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 3.6e-26 122.1 140 47.1
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.7e-26 121.7 143 46.2
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 8.0e-26 120.9 143 44.1
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 1.1e-25 120.6 132 49.2
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 2.3e-25 119.4 143 46.2
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 5.2e-25 118.2 143 46.2
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.2e-25 118.2 142 45.8
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 6.8e-25 117.9 136 46.3
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 1.2e-24 117.1 143 45.5
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 2.0e-24 116.3 140 45.0
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 2.0e-24 116.3 132 45.5
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 3.4e-24 115.5 130 46.9
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 7.5e-24 114.4 135 43.0
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 2.9e-23 112.5 137 45.3
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 2.9e-23 112.5 142 45.1
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 3.7e-23 112.1 124 49.2
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 4.9e-23 111.7 141 39.0
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 6.4e-23 111.3 157 40.1
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 8.3e-23 110.9 135 45.9
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 1.1e-22 110.5 167 38.3
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 3.2e-22 109.0 114 52.6
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 4.1e-22 108.6 145 41.4
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 4.1e-22 108.6 140 42.9
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 5.4e-22 108.2 154 44.2
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 5.4e-22 108.2 140 42.1
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 5.4e-22 108.2 146 40.4
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.2e-21 107.1 136 41.9
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 1.6e-21 106.7 145 44.1
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 1.6e-21 106.7 140 42.9
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 7.8e-21 104.4 143 44.1
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 7.8e-21 104.4 151 41.7
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.0e-20 104.0 147 41.5
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.0e-20 104.0 140 41.4
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 2.3e-20 102.8 146 41.1
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 6.6e-20 101.3 140 41.4
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 8.6e-20 100.9 147 40.8
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.1e-19 100.5 65 70.8
A08p12840 Brassica napus HOM05D007902 ORTHO05D009839 1.9e-19 99.8 92 58.7
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 2.5e-19 99.4 138 42.0
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 4.3e-19 98.6 135 41.5
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 8.1e-18 94.4 153 37.3
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 8.1e-18 94.4 152 37.5
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 1.1e-17 94.0 140 40.7
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 5.2e-17 91.7 153 37.9
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 1.2e-16 90.5 50 78.0
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 9.9e-16 87.4 150 40.0
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.3e-15 87.0 120 43.3
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.7e-15 86.7 83 55.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 6.4e-15 84.7 165 33.9
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 1.4e-14 83.6 83 50.6
BcaC02g09961 Brassica carinata HOM05D001334 ORTHO05D001119 3.5e-13 79.0 42 81.0
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 6.6e-12 74.7 165 31.5
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 8.6e-12 74.3 172 30.2
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 8.6e-12 74.3 172 29.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.5e-11 73.6 137 31.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.5e-11 73.6 137 34.3
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 1.5e-11 73.6 167 31.1
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 1.9e-11 73.2 174 27.6
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.5e-11 72.8 142 33.8
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 3.3e-11 72.4 163 29.4
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 4.3e-11 72.0 170 30.6
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 5.6e-11 71.6 141 33.3
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 7.3e-11 71.2 165 30.3
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 9.5e-11 70.9 176 29.0
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 9.5e-11 70.9 164 26.8
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.2e-10 70.5 165 28.5
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 1.2e-10 70.5 163 30.1
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 1.6e-10 70.1 167 29.3
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.6e-10 70.1 174 27.6
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.6e-10 70.1 165 27.3
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 2.1e-10 69.7 175 29.7
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 2.1e-10 69.7 165 27.9
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 2.1e-10 69.7 164 28.0
C04p34590 Brassica napus HOM05D000108 ORTHO05D012076 3.6e-10 68.9 37 81.1
BolC4t26224H Brassica oleracea HOM05D007902 ORTHO05D009839 3.6e-10 68.9 35 85.7
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.6e-10 68.9 128 34.4
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 3.6e-10 68.9 151 31.8
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 4.7e-10 68.6 173 30.1
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 4.7e-10 68.6 148 29.1
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 4.7e-10 68.6 175 28.0
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 4.7e-10 68.6 172 28.5
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 6.2e-10 68.2 173 29.5
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 6.2e-10 68.2 171 26.9
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 8.1e-10 67.8 59 57.6
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 8.1e-10 67.8 161 29.2
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 8.1e-10 67.8 113 33.6
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.1e-09 67.4 171 28.7
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.1e-09 67.4 180 27.2
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 1.1e-09 67.4 161 27.3
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.4e-09 67.0 180 25.6
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.4e-09 67.0 161 28.6
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.8e-09 66.6 152 28.3
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 2.4e-09 66.2 168 23.8
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 2.4e-09 66.2 175 28.6
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 2.4e-09 66.2 171 29.2
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 2.4e-09 66.2 164 25.0
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 3.1e-09 65.9 155 27.7
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 4.0e-09 65.5 169 25.4
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 4.0e-09 65.5 156 26.9
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 4.0e-09 65.5 156 26.9
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 4.0e-09 65.5 161 28.0
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 5.2e-09 65.1 180 27.8
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 5.2e-09 65.1 165 25.5
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 5.2e-09 65.1 168 29.8
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 8.9e-09 64.3 158 27.8
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 8.9e-09 64.3 158 27.8
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 8.9e-09 64.3 158 27.8
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 1.2e-08 63.9 171 25.1
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 1.5e-08 63.5 160 27.5
BolC4t23447H Brassica oleracea HOM05D013651 ORTHO05D013480 1.5e-08 63.5 107 38.3
BolC7t44774H Brassica oleracea HOM05D013651 ORTHO05D013480 1.5e-08 63.5 107 38.3
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.5e-08 63.5 167 25.1
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 1.5e-08 63.5 170 27.1
BolC6t36021H Brassica oleracea HOM05D013651 ORTHO05D013480 2.0e-08 63.2 107 38.3
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 2.0e-08 63.2 148 26.4
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.0e-08 63.2 146 29.5
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 2.6e-08 62.8 179 25.1
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 3.4e-08 62.4 108 35.2
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 3.4e-08 62.4 166 26.5
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 4.4e-08 62.0 150 29.3
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 4.4e-08 62.0 174 24.7
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 4.4e-08 62.0 178 27.0
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 5.8e-08 61.6 166 26.5
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 7.6e-08 61.2 174 25.3
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 7.6e-08 61.2 156 26.9
C07p43940 Brassica napus HOM05D003223 ORTHO05D014735 9.9e-08 60.8 34 76.5
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 9.9e-08 60.8 143 25.9
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 9.9e-08 60.8 174 25.3
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 9.9e-08 60.8 150 26.0
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 9.9e-08 60.8 180 26.7
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 9.9e-08 60.8 73 41.1
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 1.3e-07 60.5 163 31.3
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 2.9e-07 59.3 174 25.3
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 3.8e-07 58.9 159 25.2
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 3.8e-07 58.9 137 28.5
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 3.8e-07 58.9 153 25.5
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 4.9e-07 58.5 159 25.2
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 6.4e-07 58.2 131 30.5
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 8.4e-07 57.8 156 28.8
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 8.4e-07 57.8 150 25.3
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 8.4e-07 57.8 148 23.0
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 1.1e-06 57.4 168 23.8
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.1e-06 57.4 154 27.3
BolC3t20084H Brassica oleracea HOM05D013651 ORTHO05D013480 1.9e-06 56.6 104 35.6
Ca_11274_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 1.9e-06 56.6 167 26.3
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.9e-06 56.6 168 24.4
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 1.9e-06 56.6 152 24.3
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 2.4e-06 56.2 167 24.6
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 3.2e-06 55.8 167 25.1
BolC9t55641H Brassica oleracea HOM05D000108 ORTHO05D012076 4.2e-06 55.5 98 38.8
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 5.4e-06 55.1 162 25.3
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 5.4e-06 55.1 162 25.9
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 7.1e-06 54.7 167 24.6
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 7.1e-06 54.7 182 25.8
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 7.1e-06 54.7 182 25.8
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 9.2e-06 54.3 157 22.9


User provided reference genes

Program Settings