Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014852m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 1.1e-79 300.1 170 100.0
Sp6g26000 Schrenkiella parvula HOM05D002211 ORTHO05D002206 4.4e-68 261.5 170 90.6
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 2.7e-62 242.3 169 86.4
CARHR194750 Cardamine hirsuta HOM05D002211 ORTHO05D002206 4.7e-62 241.5 170 74.1
AL6G29540 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 8.8e-61 237.3 170 86.5
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 1.2e-60 236.9 178 81.5
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 3.4e-60 235.3 168 84.5
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 3.4e-60 235.3 168 83.9
BraA02t05441Z Brassica rapa HOM05D002211 ORTHO05D002206 1.3e-59 233.4 168 84.5
A10p21210 Brassica napus HOM05D002211 ORTHO05D002206 8.3e-59 230.7 166 84.3
C09p58640 Brassica napus HOM05D002211 ORTHO05D002206 8.3e-59 230.7 166 84.3
BolC9t58706H Brassica oleracea HOM05D002211 ORTHO05D002206 8.3e-59 230.7 166 84.3
Carub.0006s1659 Capsella rubella HOM05D002211 ORTHO05D002206 8.3e-59 230.7 171 73.1
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 2.0e-57 226.1 167 83.8
AT5G18310 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 5.4e-50 201.4 142 85.2
Aa31LG11G11290 Aethionema arabicum HOM05D002211 ORTHO05D002206 1.0e-45 187.2 186 65.1
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 4.6e-41 171.8 173 62.4
THA.LOC104827277 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 1.9e-34 149.8 163 53.4
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 1.4e-26 123.6 183 44.8
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.9e-26 123.2 185 44.9
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 1.6e-25 120.2 175 45.1
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-25 120.2 192 41.7
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-25 120.2 192 42.2
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 5.1e-24 115.2 184 41.3
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 3.6e-22 109.0 190 41.6
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 6.9e-21 104.8 180 40.6
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 8.9e-21 104.4 178 40.4
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 8.9e-21 104.4 178 40.4
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 8.9e-21 104.4 168 39.3
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 1.5e-20 103.6 185 38.4
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 1.5e-20 103.6 176 41.5
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 2.0e-20 103.2 176 41.5
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 7.6e-20 101.3 174 39.1
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 7.6e-20 101.3 170 39.4
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 9.9e-20 100.9 166 41.6
Lalb_Chr02g0149321 Lupinus albus HOM05D002211 ORTHO05D002206 1.3e-19 100.5 174 49.4
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 1.7e-19 100.1 184 40.8
Manes.09G144900 Manihot esculenta HOM05D002211 ORTHO05D002206 2.2e-19 99.8 183 38.3
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 4.9e-19 98.6 206 35.9
Gorai.007G268900 Gossypium raimondii HOM05D002211 ORTHO05D002206 4.9e-19 98.6 185 40.5
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.1e-18 97.4 177 39.0
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 1.4e-18 97.1 190 40.0
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 1.9e-18 96.7 174 35.6
Eucgr.B02173 Eucalyptus grandis HOM05D002211 ORTHO05D002206 3.2e-18 95.9 193 35.8
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 4.2e-18 95.5 195 35.4
MD04G1235700 Malus domestica HOM05D002211 ORTHO05D002206 5.4e-18 95.1 195 36.4
Sabra13G0047200 Salix brachista HOM05D002211 ORTHO05D002206 5.4e-18 95.1 158 38.6
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 2.1e-17 93.2 173 38.2
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 7.8e-17 91.3 164 40.9
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 1.3e-16 90.5 174 36.8
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.3e-16 89.7 186 35.5
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 3.0e-16 89.4 168 36.9
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 3.0e-16 89.4 164 36.0
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 3.9e-16 89.0 161 38.5
FvH4_6g01200 Fragaria vesca HOM05D001040 ORTHO05D002795 5.1e-16 88.6 167 37.7
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 8.7e-16 87.8 163 39.3
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 1.1e-15 87.4 177 35.6
Lj1g0002409 Lotus japonicus HOM05D002211 ORTHO05D002206 1.1e-15 87.4 157 37.6
FAN05G1484 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.5e-15 87.0 163 38.0
Oeu001241.1 Olea europaea HOM05D002211 ORTHO05D002206 1.9e-15 86.7 174 36.2
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 3.3e-15 85.9 177 35.0
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 4.3e-15 85.5 184 35.9
Lalb_Chr04g0261851 Lupinus albus HOM05D002211 ORTHO05D002206 4.3e-15 85.5 177 35.0
MSTRG.8176 Avicennia marina HOM05D002211 ORTHO05D002206 5.6e-15 85.1 176 36.9
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 5.6e-15 85.1 169 36.7
PGR142G0339 Punica granatum HOM05D002211 ORTHO05D002206 1.3e-14 84.0 172 36.6
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-14 83.6 191 35.1
Migut.F02065 Erythranthe guttata HOM05D002211 ORTHO05D002206 2.1e-14 83.2 179 36.3
Sed0010531 Sechium edule HOM05D002211 ORTHO05D002206 3.6e-14 82.4 162 35.2
Atru.chr2.1234 Acer truncatum HOM05D002211 ORTHO05D002206 4.8e-14 82.0 185 35.1
ClCG11G010190 Citrullus lanatus HOM05D002211 ORTHO05D002206 4.8e-14 82.0 159 35.8
A04p06090 Brassica napus HOM05D002211 ORTHO05D002206 6.2e-14 81.6 64 70.3
arahy.Tifrunner.gnm1.ann1.ML5U0X Arachis hypogaea HOM05D002211 ORTHO05D002206 8.1e-14 81.3 179 35.2
Peaxi162Scf00071g00139 Petunia axillaris HOM05D002211 ORTHO05D002206 1.1e-13 80.9 160 35.6
Psat3g005600 Pisum sativum HOM05D002211 ORTHO05D002206 1.1e-13 80.9 160 33.1
MSTRG.9225 Avicennia marina HOM05D002211 ORTHO05D002206 1.4e-13 80.5 181 34.8
Dinv10852 Davidia involucrata HOM05D002211 ORTHO05D002206 1.4e-13 80.5 183 35.0
SalBow1G6037 Salvia bowleyana HOM05D002211 ORTHO05D002206 1.4e-13 80.5 173 38.2
Haze_04489 Corylus avellana HOM05D002211 ORTHO05D002206 2.4e-13 79.7 164 33.5
Sabra19G0036300 Salix brachista HOM05D002211 ORTHO05D002206 2.4e-13 79.7 158 33.5
Sabra19G0039400 Salix brachista HOM05D002211 ORTHO05D002206 2.4e-13 79.7 158 33.5
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 3.1e-13 79.3 173 37.0
SGA_v2.0_scaffold13G06340 Striga asiatica HOM05D002211 ORTHO05D002206 3.1e-13 79.3 162 32.7
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 4.0e-13 79.0 152 37.5
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 9.0e-13 77.8 157 34.4
Psat3g005480 Pisum sativum HOM05D002211 ORTHO05D002206 1.2e-12 77.4 150 39.3
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 1.5e-12 77.0 164 39.0
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 1.5e-12 77.0 171 34.5
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 3.4e-12 75.9 167 35.3
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.4e-12 75.9 162 35.8
PGSC0003DMG400004509 Solanum tuberosum HOM05D002211 ORTHO05D002206 4.5e-12 75.5 163 35.6
Gohir.D13G105700 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.8e-12 75.1 173 34.7
Solyc04g050790.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 5.8e-12 75.1 160 35.6
Gorai.013G118400 Gossypium raimondii HOM05D002211 ORTHO05D002206 7.6e-12 74.7 175 36.0
Sopen04g021740 Solanum pennellii HOM05D002211 ORTHO05D002206 1.3e-11 73.9 160 35.6
Eucgr.H04158 Eucalyptus grandis HOM05D002211 ORTHO05D002206 6.4e-11 71.6 160 34.4
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 6.4e-11 71.6 163 35.6
Phvul.L001850 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 8.4e-11 71.2 165 33.3
Rhsim09G0131800 Rhododendron simsii HOM05D002211 ORTHO05D002206 8.4e-11 71.2 153 32.7
Glyma.10G169100 Glycine max HOM05D002211 ORTHO05D002206 2.4e-10 69.7 178 33.1
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 5.4e-10 68.6 166 34.9
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 9.3e-10 67.8 167 34.1
vmacro10391 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 9.3e-10 67.8 170 30.6
CDE05G1888 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 1.2e-09 67.4 156 32.1
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 1.2e-09 67.4 164 32.9
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 1.2e-09 67.4 164 30.5
FAN09G3091 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.1e-09 66.6 221 29.9
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 2.1e-09 66.6 157 33.1
HPP92_021397 Vanilla planifolia HOM05D002211 ORTHO05D002206 2.1e-09 66.6 145 33.1
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 2.7e-09 66.2 173 32.4
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 2.7e-09 66.2 163 33.7
Actinidia34770 Actinidia chinensis HOM05D002211 ORTHO05D002206 3.5e-09 65.9 197 30.5
CDE05G0436 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 3.5e-09 65.9 155 31.6
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 4.6e-09 65.5 167 33.5
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 4.6e-09 65.5 164 31.7
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 6.0e-09 65.1 164 30.5
VMungo0720G3084 Vigna mungo HOM05D002211 ORTHO05D002206 6.0e-09 65.1 153 32.7
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 7.9e-09 64.7 167 32.9
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.0e-08 64.3 166 33.7
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.0e-08 64.3 164 32.9
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.0e-08 64.3 164 32.9
QL01p047517 Quercus lobata HOM05D002211 ORTHO05D002206 1.0e-08 64.3 190 30.0
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 1.3e-08 63.9 164 31.1
MBI07_g35241_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 1.3e-08 63.9 154 33.1
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 1.8e-08 63.5 164 31.1
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 1.8e-08 63.5 167 33.5
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.8e-08 63.5 164 32.9
PSO357G0293 Papaver somniferum HOM05D002211 ORTHO05D002206 2.3e-08 63.2 196 30.6
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.9e-08 62.4 160 30.6
Glyma.20G220500 Glycine max HOM05D002211 ORTHO05D002206 3.9e-08 62.4 173 32.4
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 5.1e-08 62.0 166 30.7
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 5.1e-08 62.0 164 31.7
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 5.1e-08 62.0 153 32.0
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 5.1e-08 62.0 174 33.9
ATR0686G227 Amborella trichopoda HOM05D002211 ORTHO05D002206 6.7e-08 61.6 143 32.9
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.7e-08 61.6 162 29.6
Gohir.D08G053500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.7e-08 61.6 39 66.7
Gorai.011G084500 Gossypium raimondii HOM05D002211 ORTHO05D002206 6.7e-08 61.6 39 66.7
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 6.7e-08 61.6 164 32.3
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 8.7e-08 61.2 162 32.7
Nitab4.5_0000504g0030 Nicotiana tabacum HOM05D002211 ORTHO05D002206 8.7e-08 61.2 35 74.3
SalBow1G4707 Salvia bowleyana HOM05D002211 ORTHO05D002206 8.7e-08 61.2 34 79.4
Gorai.013G198900 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.1e-07 60.8 39 66.7
Gohir.D10G077733 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.9e-07 60.1 39 64.1
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 1.9e-07 60.1 165 29.7
Gohir.D10G077875 Gossypium hirsutum HOM05D002211 ORTHO05D002206 2.5e-07 59.7 39 64.1
MSTRG.21304 Avicennia marina HOM05D002211 ORTHO05D002206 3.3e-07 59.3 171 31.6
Cc09_g03180 Coffea canephora HOM05D002211 ORTHO05D002206 3.3e-07 59.3 256 28.1
Atru.chr6.3550 Acer truncatum HOM05D002211 ORTHO05D002206 4.3e-07 58.9 157 31.8
Actinidia38919 Actinidia chinensis HOM05D002211 ORTHO05D002206 4.3e-07 58.9 41 65.9
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 4.3e-07 58.9 160 30.6
DCAR_005529 Daucus carota HOM05D002211 ORTHO05D002206 4.3e-07 58.9 176 29.0
Actinidia23360 Actinidia chinensis HOM05D002211 ORTHO05D002206 5.6e-07 58.5 148 31.8
CDE02G4254 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 7.4e-07 58.2 144 29.2
Eucgr.K02089 Eucalyptus grandis HOM05D002211 ORTHO05D002206 7.4e-07 58.2 172 29.7
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 7.4e-07 58.2 162 29.6
Sc06g0005240 Simmondsia chinensis HOM05D002211 ORTHO05D002206 7.4e-07 58.2 33 75.8
TAR636G2930 Trochodendron aralioides HOM05D002211 ORTHO05D002206 9.6e-07 57.8 150 29.3
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.3e-06 57.4 163 30.7
Medtr8g011470 Medicago truncatula HOM05D002211 ORTHO05D002206 1.3e-06 57.4 152 32.9
Potri.015G040500 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.3e-06 57.4 35 62.9
HPP92_009930 Vanilla planifolia HOM05D043774 ORTHO05D002206 1.3e-06 57.4 156 29.5
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 1.6e-06 57.0 161 29.2
Hund07149 Selenicereus undatus HOM05D002211 ORTHO05D002206 1.6e-06 57.0 187 29.4
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 2.1e-06 56.6 165 30.3
Lalb_Chr03g0041111 Lupinus albus HOM05D002211 ORTHO05D002206 2.1e-06 56.6 151 30.5
Psat4g206640 Pisum sativum HOM05D002211 ORTHO05D002206 2.1e-06 56.6 163 28.8
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.8e-06 56.2 163 30.1
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.8e-06 56.2 166 29.5
PSO017G2189 Papaver somniferum HOM05D002211 ORTHO05D002206 2.8e-06 56.2 38 63.2
PSO675G4717 Papaver somniferum HOM05D002211 ORTHO05D002206 2.8e-06 56.2 38 63.2
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 2.8e-06 56.2 164 31.7
CDE11G1194 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 3.7e-06 55.8 156 30.8
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.7e-06 55.8 164 28.7
PSO170G3935 Papaver somniferum HOM05D002211 ORTHO05D002206 3.7e-06 55.8 187 28.3
unitig_37.g12278 Utricularia gibba HOM05D002211 ORTHO05D002206 3.7e-06 55.8 142 30.3
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 3.7e-06 55.8 170 28.8
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 4.8e-06 55.5 164 29.9
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 6.2e-06 55.1 165 31.5
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 8.1e-06 54.7 155 30.3


User provided reference genes

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