Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 6.2e-65 251.1 177 100.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 9.2e-53 210.7 177 91.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.6e-50 201.4 177 85.9
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 4.4e-47 191.8 177 87.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.9e-46 189.1 177 84.7
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.9e-46 189.1 177 75.1
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 7.1e-45 184.5 177 84.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 4.6e-44 181.8 178 83.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 6.0e-44 181.4 178 83.1
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 6.0e-44 181.4 178 83.1
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 7.8e-44 181.0 178 82.6
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 8.7e-43 177.6 174 69.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.3e-42 175.6 178 70.2
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 9.6e-42 174.1 179 81.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.8e-41 172.6 177 69.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 8.1e-41 171.0 176 69.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.6e-39 166.0 162 69.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 7.6e-39 164.5 166 69.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 7.6e-39 164.5 166 69.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 7.6e-39 164.5 166 69.3
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.1e-36 156.4 176 75.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.5e-36 155.6 177 64.4
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.3e-35 152.9 177 62.1
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.3e-35 152.9 180 63.9
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.0e-35 152.5 177 72.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.9e-35 152.1 177 61.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.1e-34 150.6 177 60.5
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.1e-34 150.6 180 76.7
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.3e-34 149.1 168 75.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.3e-34 149.1 179 73.7
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 4.3e-34 148.7 177 76.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 4.3e-34 148.7 177 76.3
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 168 75.0
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.3e-34 148.7 168 75.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.3e-34 148.7 179 62.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.3e-34 148.7 168 65.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.3e-34 148.7 176 72.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 177 71.2
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.6e-34 148.3 179 71.5
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.6e-33 146.7 177 72.9
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.6e-33 146.7 177 60.5
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 4.8e-33 145.2 180 73.9
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 4.8e-33 145.2 177 71.8
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.2e-33 144.8 177 59.3
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 8.1e-33 144.4 168 76.8
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.1e-32 144.1 177 58.8
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-32 144.1 177 58.8
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-32 144.1 177 58.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.4e-32 143.7 177 72.9
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.4e-32 143.7 168 61.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.4e-32 143.7 160 73.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.4e-32 143.7 177 71.8
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.8e-32 143.3 160 70.6
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.4e-32 142.9 168 63.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.4e-32 142.9 166 74.1
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.1e-32 142.5 170 73.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.1e-32 142.5 170 62.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.1e-32 142.5 168 60.1
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.0e-32 142.1 162 71.6
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 4.0e-32 142.1 180 61.7
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 5.3e-32 141.7 183 48.1
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 5.3e-32 141.7 168 60.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 6.9e-32 141.4 177 59.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 6.9e-32 141.4 166 78.3
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.0e-32 141.0 177 59.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.2e-31 140.6 177 59.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.2e-31 140.6 167 63.5
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.5e-31 140.2 165 62.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.0e-31 139.8 168 72.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 5.8e-31 138.3 168 56.5
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 5.8e-31 138.3 160 62.5
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.8e-31 138.3 169 60.4
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 5.8e-31 138.3 177 72.3
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 7.6e-31 137.9 177 67.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.9e-31 137.5 160 63.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 9.9e-31 137.5 177 63.8
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 168 63.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.3e-30 137.1 168 70.2
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.2e-30 136.3 160 73.1
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.9e-30 136.0 172 59.9
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 70.6
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 70.6
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 70.6
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 4.9e-30 135.2 168 58.9
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 6.4e-30 134.8 161 64.6
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 6.4e-30 134.8 156 67.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 6.4e-30 134.8 170 58.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-29 134.0 168 61.3
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 176 59.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.4e-29 133.7 161 70.8
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.4e-29 133.7 149 73.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.9e-29 133.3 168 61.9
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.9e-29 133.3 166 71.1
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.2e-29 132.1 163 60.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.4e-29 131.7 168 57.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 9.3e-29 131.0 175 69.7
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 9.3e-29 131.0 164 71.3
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 9.3e-29 131.0 172 70.9
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 164 68.9
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.6e-28 130.2 175 69.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.6e-28 130.2 177 69.5
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.1e-28 129.8 167 70.1
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.0e-28 128.3 166 68.7
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.0e-28 128.3 160 61.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 6.0e-28 128.3 171 72.5
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-27 127.5 166 68.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.0e-27 127.5 176 59.1
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.8e-27 126.7 165 65.5
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.3e-27 126.3 158 74.1
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.3e-27 126.3 160 61.9
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.3e-27 126.3 160 61.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.9e-27 125.6 158 74.1
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.9e-27 125.6 160 61.9
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.1e-27 125.2 168 55.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.1e-27 125.2 175 69.7
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.1e-27 125.2 144 68.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.5e-26 122.9 164 70.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.3e-26 122.5 172 57.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.3e-26 122.5 176 44.3
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.3e-26 122.5 167 56.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 4.3e-26 122.1 160 46.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 7.4e-26 121.3 176 43.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.4e-26 121.3 166 44.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 7.4e-26 121.3 169 53.8
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.3e-25 120.6 176 54.0
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.3e-25 120.6 242 35.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.7e-25 119.0 170 42.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 6.2e-25 118.2 155 58.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.1e-24 117.5 177 62.7
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 6.9e-24 114.8 166 48.8
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 6.9e-24 114.8 164 51.2
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.2e-23 114.0 146 74.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 5.8e-23 111.7 170 42.4
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.9e-22 108.6 176 66.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.2e-21 105.5 176 38.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.2e-20 104.0 149 55.0
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.3e-16 88.6 121 57.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 9.0e-16 87.8 131 55.7
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.0e-14 82.0 82 53.7
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 8.4e-14 81.3 103 73.8
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.5e-12 75.9 117 35.0
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 4.6e-12 75.5 146 48.6
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.0e-11 74.3 122 55.7
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.3e-11 73.2 128 50.8
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.3e-11 73.2 77 46.8
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 3.0e-11 72.8 110 58.2
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 5.1e-11 72.0 47 68.1
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 6.7e-11 71.6 90 70.0
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.3e-10 69.3 105 61.0
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.6e-07 59.7 50 62.0


User provided reference genes

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