Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 3.0e-67 258.8 180 100.0
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.3e-62 243.4 185 90.3
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 4.2e-61 238.4 182 89.6
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 2.7e-60 235.7 178 85.4
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 2.7e-60 235.7 180 82.8
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 2.7e-60 235.7 180 82.8
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 2.7e-60 235.7 178 83.1
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 3.6e-60 235.3 178 83.1
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 1.8e-59 233.0 178 89.3
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 2.0e-58 229.6 201 72.1
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.1e-56 223.8 208 72.6
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 2.4e-56 222.6 201 70.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 1.9e-45 186.4 178 60.1
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 1.1e-40 170.6 183 66.7
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 1.8e-32 143.3 191 45.0
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.0e-30 137.5 194 45.4
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.1e-29 134.0 190 43.7
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.9e-29 133.3 191 45.0
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 9.5e-29 131.0 194 42.8
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.6e-28 130.2 191 44.0
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.8e-28 129.4 192 42.7
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 3.6e-28 129.0 184 40.8
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 8.0e-28 127.9 188 44.1
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.3e-27 126.3 194 41.8
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 3.0e-27 125.9 188 43.6
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 6.8e-27 124.8 187 41.7
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 6.8e-27 124.8 190 43.2
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 8.8e-27 124.4 190 41.6
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 2.0e-26 123.2 186 41.4
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 2.6e-26 122.9 185 40.5
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.6e-26 122.9 185 41.1
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 2.6e-26 122.9 189 41.8
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 2.6e-26 122.9 189 41.3
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 4.4e-26 122.1 191 40.3
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 5.7e-26 121.7 190 42.6
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 7.5e-26 121.3 186 43.0
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 9.8e-26 120.9 185 41.6
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 9.8e-26 120.9 190 40.5
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.3e-25 120.6 185 41.6
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 2.8e-25 119.4 193 42.5
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.8e-25 119.4 191 39.3
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 8.3e-25 117.9 193 47.2
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.1e-24 117.5 190 41.1
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 1.1e-24 117.5 194 44.3
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 1.4e-24 117.1 190 40.5
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.4e-24 117.1 190 40.5
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 1.4e-24 117.1 193 38.3
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.8e-24 116.7 189 40.7
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.8e-24 116.7 192 39.1
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.8e-24 116.7 198 37.9
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 2.4e-24 116.3 189 40.2
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 3.1e-24 115.9 194 39.2
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.1e-24 115.9 188 40.4
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.1e-24 115.9 188 40.4
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.1e-24 115.5 190 40.0
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 4.1e-24 115.5 193 39.4
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 4.1e-24 115.5 192 37.0
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 5.4e-24 115.2 188 39.9
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 5.4e-24 115.2 192 40.1
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 7.0e-24 114.8 193 37.8
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 7.0e-24 114.8 192 40.6
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 2.0e-23 113.2 197 37.1
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 4.5e-23 112.1 194 36.6
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 4.5e-23 112.1 194 36.6
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.5e-23 112.1 190 39.5
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 5.9e-23 111.7 190 38.9
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.0e-22 110.9 188 37.8
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 1.3e-22 110.5 190 39.5
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-22 110.5 189 38.1
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.7e-22 110.2 182 38.5
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.7e-22 110.2 185 36.8
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 2.9e-22 109.4 200 38.5
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.1e-21 107.5 185 40.0
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 1.1e-21 107.5 191 37.7
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.5e-21 107.1 189 37.6
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 1.5e-21 107.1 189 38.1
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 7.3e-21 104.8 190 40.5
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 7.3e-21 104.8 191 37.2
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.4e-19 100.5 187 37.4
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 1.4e-19 100.5 187 36.9
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.8e-19 100.1 187 36.4
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 1.8e-19 100.1 190 36.8
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 1.8e-19 100.1 187 36.9
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.8e-19 100.1 184 45.7
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 6.8e-19 98.2 188 36.2
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 3.4e-18 95.9 189 36.0
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 3.4e-18 95.9 201 42.3
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 4.4e-18 95.5 185 45.4
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 5.7e-18 95.1 176 38.1
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 9.8e-18 94.4 191 35.6
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.2e-17 93.2 179 35.2
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 2.2e-17 93.2 191 35.6
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.9e-17 92.8 191 35.1
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 3.7e-17 92.4 192 41.1
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 6.4e-17 91.7 186 35.5
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 2.4e-16 89.7 190 31.6
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 3.2e-16 89.4 187 34.2
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 3.2e-16 89.4 191 33.0
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 7.0e-16 88.2 187 35.3
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 9.2e-16 87.8 194 32.0
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 1.6e-15 87.0 185 37.3
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 2.7e-15 86.3 190 34.2
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 3.5e-15 85.9 174 32.8
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 4.6e-15 85.5 198 36.9
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.0e-14 84.3 172 33.1
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.0e-14 84.3 190 33.7
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.0e-14 84.3 189 32.3
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.7e-14 83.6 190 34.2
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 1.1e-13 80.9 190 31.1
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 7.3e-13 78.2 194 32.0
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.6e-12 77.0 204 29.9
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.1e-12 76.6 181 30.9
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.6e-12 75.9 182 30.8
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 4.7e-12 75.5 194 31.4
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 4.7e-12 75.5 187 27.8
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 6.2e-12 75.1 189 31.2
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 8.0e-12 74.7 176 33.0
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.2e-10 70.9 169 30.2
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 1.5e-10 70.5 178 32.0
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.5e-10 70.5 184 31.0
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 7.5e-10 68.2 179 30.7
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 2.2e-09 66.6 59 59.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.9e-09 66.2 166 28.9
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 2.9e-09 66.2 184 29.9
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 1.6e-07 60.5 178 26.4
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.6e-07 60.5 185 25.9
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.5e-07 59.3 172 27.3
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.5e-07 59.3 34 70.6
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 2.3e-06 56.6 176 30.7
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 8.6e-06 54.7 167 26.9


User provided reference genes

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