Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 4.6e-87 324.7 184 100.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 9.9e-66 253.8 186 82.8
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 8.4e-65 250.8 186 80.1
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.9e-64 249.6 186 80.6
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.3e-62 243.4 186 79.0
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.3e-62 243.4 186 80.1
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.9e-57 225.7 183 71.0
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.0e-54 217.2 183 69.9
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.3e-54 216.1 183 68.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 5.1e-54 214.9 184 67.9
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 5.1e-54 214.9 186 69.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.3e-53 212.2 184 70.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.3e-53 212.2 184 70.1
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.9e-46 188.7 177 63.3
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.8e-44 182.6 189 64.6
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 4.5e-42 175.3 186 61.3
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 7.6e-42 174.5 185 62.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.0e-41 174.1 184 58.7
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.2e-40 169.1 184 60.9
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 4.2e-32 142.1 182 48.4
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 9.3e-32 141.0 128 57.0
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.2e-31 140.6 128 57.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 6.7e-30 134.8 170 45.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 8.7e-30 134.4 170 46.5
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 8.7e-30 134.4 117 61.5
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.1e-29 134.0 113 59.3
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.1e-29 134.0 113 59.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.1e-29 134.0 187 53.5
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.5e-29 132.9 112 59.8
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.5e-29 132.9 112 59.8
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 4.3e-29 132.1 112 65.2
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.7e-29 131.0 76 82.9
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.3e-28 130.6 123 60.2
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.3e-28 130.6 143 49.0
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.6e-28 130.2 77 79.2
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.2e-28 129.8 110 60.0
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.8e-28 129.4 115 60.0
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 4.8e-28 128.6 77 77.9
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 6.3e-28 128.3 77 76.6
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 8.2e-28 127.9 76 77.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 8.2e-28 127.9 76 80.3
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 8.2e-28 127.9 77 77.9
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 8.2e-28 127.9 124 56.5
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 8.2e-28 127.9 77 75.3
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.1e-27 127.5 141 54.6
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.4e-27 127.1 77 76.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.4e-27 127.1 104 65.4
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.4e-27 127.1 104 65.4
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.8e-27 126.7 126 58.7
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.4e-27 126.3 142 54.2
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.4e-27 126.3 153 51.6
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.4e-27 126.3 179 43.6
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 3.1e-27 125.9 77 75.3
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 3.1e-27 125.9 76 80.3
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.2e-26 124.0 187 43.9
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.2e-26 124.0 139 50.4
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.5e-26 123.6 145 53.8
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-26 123.2 173 46.8
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.6e-26 122.9 77 75.3
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.6e-26 122.9 77 74.0
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.4e-26 122.5 76 75.0
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 3.4e-26 122.5 128 49.2
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 4.5e-26 122.1 183 46.4
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 4.5e-26 122.1 129 54.3
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 5.9e-26 121.7 156 46.8
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 5.9e-26 121.7 168 47.6
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 7.7e-26 121.3 76 72.4
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.7e-25 120.2 156 46.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.7e-25 120.2 69 79.7
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.9e-25 119.4 78 71.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.9e-25 119.4 78 73.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.8e-25 119.0 77 74.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 5.0e-25 118.6 156 46.2
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.5e-25 118.2 67 80.6
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 6.5e-25 118.2 67 80.6
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 6.5e-25 118.2 108 54.6
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 6.5e-25 118.2 78 71.8
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 8.5e-25 117.9 104 60.6
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 3.2e-24 115.9 78 73.1
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 4.2e-24 115.5 160 49.4
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 5.5e-24 115.2 130 50.0
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 5.5e-24 115.2 148 47.3
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 7.2e-24 114.8 76 67.1
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 9.4e-24 114.4 114 50.0
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.6e-23 113.6 79 70.9
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 2.1e-23 113.2 79 65.8
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 6.1e-23 111.7 172 42.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.8e-22 110.2 170 46.5
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.8e-22 110.2 143 44.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.3e-22 109.8 77 70.1
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.0e-22 109.4 108 50.9
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 6.7e-22 108.2 78 59.0
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 6.7e-22 108.2 143 45.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.7e-22 108.2 78 59.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 8.8e-22 107.8 80 68.8
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 1.5e-21 107.1 69 73.9
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.5e-21 107.1 79 69.6
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.0e-21 106.7 79 68.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 2.0e-21 106.7 110 54.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 3.3e-21 105.9 79 68.4
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 4.3e-21 105.5 100 47.0
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 7.4e-21 104.8 115 53.0
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 7.4e-21 104.8 80 67.5
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 7.4e-21 104.8 78 57.7
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 9.7e-21 104.4 187 40.6
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.3e-20 104.0 109 52.3
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.7e-20 103.6 80 67.5
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.2e-20 103.2 79 64.6
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 3.7e-20 102.4 81 61.7
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 4.8e-20 102.1 149 41.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 4.8e-20 102.1 76 57.9
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.3e-20 101.7 78 65.4
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 6.3e-20 101.7 128 47.7
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 1.8e-19 100.1 112 62.5
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 1.8e-19 100.1 112 62.5
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.8e-19 100.1 112 45.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.4e-19 99.8 77 62.3
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 3.1e-19 99.4 79 65.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.1e-19 99.4 77 57.1
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 4.1e-19 99.0 148 45.9
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 4.1e-19 99.0 78 64.1
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 5.3e-19 98.6 78 64.1
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 9.1e-19 97.8 125 44.8
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.2e-18 97.4 128 44.5
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-18 97.4 78 62.8
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.6e-18 96.3 77 55.8
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.4e-18 95.9 125 47.2
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 4.5e-18 95.5 117 48.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 7.7e-18 94.7 80 58.8
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.9e-17 92.8 77 55.8
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 6.5e-17 91.7 76 52.6
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.2e-16 89.4 72 59.7
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.6e-15 87.0 76 55.3
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 4.7e-15 85.5 123 43.9
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 4.4e-13 79.0 102 46.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.4e-13 78.2 78 52.6
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 3.7e-12 75.9 131 42.0
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 8.2e-12 74.7 167 35.9
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.1e-11 74.3 107 44.9
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-11 73.6 129 38.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-11 73.6 129 38.0
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.1e-11 72.8 167 34.7
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 6.1e-07 58.5 77 45.5
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.0e-07 58.2 80 42.5


User provided reference genes

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