Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 1.0e-91 340.1 184 100.0
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 1.1e-77 293.5 184 88.6
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 9.5e-77 290.4 184 87.0
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.5e-74 283.1 185 85.9
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 2.6e-74 282.3 184 84.8
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 4.4e-74 281.6 179 86.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 2.2e-73 279.3 185 85.9
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 2.2e-73 279.3 185 85.9
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 2.9e-73 278.9 184 83.7
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 3.7e-73 278.5 186 86.0
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 3.7e-73 278.5 185 85.4
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 3.7e-73 278.5 186 86.0
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 4.1e-72 275.0 184 83.7
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 1.2e-71 273.5 176 85.2
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 7.8e-71 270.8 184 83.2
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 1.3e-70 270.0 176 84.1
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 2.3e-70 269.2 184 83.2
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.2e-55 220.3 186 69.4
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 1.6e-55 219.9 185 70.8
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 7.6e-42 174.5 136 75.7
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 3.8e-41 172.2 184 58.2
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.5e-40 169.5 182 57.1
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 1.0e-38 164.1 184 56.0
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 3.9e-38 162.2 184 56.0
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 1.1e-37 160.6 181 56.9
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 3.3e-37 159.1 174 56.9
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.3e-37 158.7 178 55.6
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 6.2e-36 154.8 184 54.9
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 6.2e-36 154.8 185 54.6
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 1.2e-34 150.6 128 67.2
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.0e-34 149.8 96 79.2
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 3.4e-34 149.1 105 75.2
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 4.5e-34 148.7 96 78.1
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 5.8e-34 148.3 194 53.1
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 5.8e-34 148.3 95 80.0
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 7.6e-34 147.9 99 74.7
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 1.0e-33 147.5 142 60.6
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.0e-33 147.5 95 77.9
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 1.7e-33 146.7 95 77.9
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.7e-33 146.7 96 77.1
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 1.7e-33 146.7 95 76.8
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.9e-33 146.0 179 51.4
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 2.9e-33 146.0 95 78.9
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 3.8e-33 145.6 95 76.8
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 3.8e-33 145.6 95 76.8
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 3.8e-33 145.6 95 76.8
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 5.0e-33 145.2 194 53.1
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 5.0e-33 145.2 188 52.7
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 6.5e-33 144.8 189 51.9
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 8.4e-33 144.4 95 76.8
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 8.4e-33 144.4 187 54.0
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 8.4e-33 144.4 167 52.7
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.1e-32 144.1 141 61.7
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 1.4e-32 143.7 179 52.0
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.4e-32 143.7 192 52.6
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 1.9e-32 143.3 194 52.6
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 1.9e-32 143.3 191 50.8
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 4.2e-32 142.1 98 75.5
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 5.5e-32 141.7 96 76.0
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 7.2e-32 141.4 99 75.8
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 9.3e-32 141.0 90 80.0
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 9.3e-32 141.0 95 77.9
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 9.3e-32 141.0 95 73.7
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 1.6e-31 140.2 153 57.5
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.1e-31 139.8 95 76.8
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 3.5e-31 139.0 109 67.0
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 3.5e-31 139.0 96 71.9
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 4.6e-31 138.7 99 71.7
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 4.6e-31 138.7 128 60.9
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 7.9e-31 137.9 116 68.1
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 7.9e-31 137.9 95 76.8
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 1.0e-30 137.5 99 70.7
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 1.3e-30 137.1 95 75.8
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.8e-30 136.7 89 76.4
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 3.9e-30 135.6 96 76.0
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 6.7e-30 134.8 95 71.6
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 8.7e-30 134.4 99 66.7
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 8.7e-30 134.4 89 78.7
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 8.7e-30 134.4 95 72.6
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.5e-29 133.7 102 71.6
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 2.5e-29 132.9 101 68.3
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 2.5e-29 132.9 95 70.5
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 4.3e-29 132.1 98 68.4
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 5.7e-29 131.7 93 67.7
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 7.4e-29 131.3 96 74.0
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 9.7e-29 131.0 147 53.1
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 9.7e-29 131.0 101 70.3
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 1.6e-28 130.2 140 57.1
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 2.8e-28 129.4 97 71.1
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 3.7e-28 129.0 92 71.7
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 6.3e-28 128.3 75 84.0
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 8.2e-28 127.9 186 47.8
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 8.2e-28 127.9 144 53.5
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 4.1e-27 125.6 86 74.4
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 9.0e-27 124.4 183 45.4
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 9.0e-27 124.4 89 73.0
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 1.2e-26 124.0 237 43.5
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 1.5e-26 123.6 75 82.7
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 1.3e-25 120.6 95 66.3
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.2e-25 119.8 95 63.2
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 5.0e-25 118.6 160 46.9
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 6.5e-25 118.2 99 61.6
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 8.5e-25 117.9 97 60.8
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.9e-24 116.7 84 67.9
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 2.7e-23 112.8 73 76.7
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 3.0e-22 109.4 75 74.7
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 7.4e-21 104.8 115 53.9
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.8e-19 100.1 92 56.5
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 6.5e-17 91.7 81 54.3
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 1.1e-16 90.9 144 45.8
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 4.2e-16 89.0 77 59.7
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.1e-13 80.9 45 86.7
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.6e-13 79.7 45 82.2
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 7.4e-13 78.2 72 47.2
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 4.8e-12 75.5 102 45.1
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 8.5e-09 64.7 47 78.7
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 4.2e-08 62.4 71 53.5
Aa31LG5G14020 Aethionema arabicum HOM05D006461 ORTHO05D008199 5.5e-08 62.0 109 45.9
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 9.4e-08 61.2 39 79.5
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.6e-07 60.5 66 54.5
AL3G13180 Arabidopsis lyrata HOM05D058763 ORTHO05D079728 1.8e-06 57.0 58 55.2
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 6.7e-06 55.1 90 38.9


User provided reference genes

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