Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 2.3e-110 402.1 192 100.0
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 1.2e-74 283.5 196 76.5
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 1.8e-73 279.6 194 73.7
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 2.3e-73 279.3 194 74.7
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 9.6e-72 273.9 194 74.2
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 1.3e-71 273.5 195 72.8
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 3.7e-71 271.9 195 72.8
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 3.7e-71 271.9 195 72.8
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.1e-70 270.4 221 67.0
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 5.3e-70 268.1 193 71.5
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 5.3e-70 268.1 195 69.7
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 5.3e-70 268.1 195 69.7
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 6.9e-70 267.7 200 71.5
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 6.9e-70 267.7 199 71.4
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 6.9e-70 267.7 199 71.4
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 2.0e-69 266.2 196 69.9
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 2.6e-69 265.8 200 71.0
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 1.0e-68 263.8 195 68.7
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 1.0e-68 263.8 195 68.7
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 1.3e-65 253.4 192 69.3
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 2.2e-60 236.1 192 67.7
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 1.1e-59 233.8 205 66.8
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 4.2e-51 205.3 187 57.2
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 9.4e-51 204.1 192 56.2
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 2.7e-50 202.6 197 58.4
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 3.0e-49 199.1 191 56.5
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 3.3e-48 195.7 189 55.6
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 3.8e-44 182.2 190 50.0
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 6.1e-42 174.9 199 49.7
THA.LOC104799609 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 3.0e-41 172.6 222 48.2
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.1e-38 164.1 189 48.1
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 2.4e-38 162.9 199 47.7
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 4.1e-38 162.2 196 45.9
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 5.3e-38 161.8 189 47.6
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 7.0e-38 161.4 201 47.8
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 2.0e-37 159.8 201 43.3
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 2.9e-36 156.0 187 43.3
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 6.5e-36 154.8 196 45.4
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.9e-35 153.3 191 46.6
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 5.5e-35 151.8 185 44.9
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 5.5e-35 151.8 205 43.4
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 7.2e-35 151.4 185 44.9
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 4.7e-34 148.7 190 45.8
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 8.0e-34 147.9 195 46.2
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 4.4e-32 142.1 201 42.3
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 9.7e-32 141.0 192 44.3
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.3e-31 140.6 193 44.0
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 3.7e-31 139.0 192 42.2
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 8.2e-31 137.9 188 43.1
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 2.4e-30 136.3 197 39.1
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 4.1e-30 135.6 204 42.2
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 7.0e-30 134.8 198 44.4
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 1.6e-29 133.7 201 45.8
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 3.5e-29 132.5 189 44.4
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 4.5e-29 132.1 195 43.1
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 4.5e-29 132.1 197 41.1
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 7.7e-29 131.3 192 43.2
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 7.7e-29 131.3 186 42.5
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 1.0e-28 131.0 199 41.7
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 1.7e-28 130.2 202 42.1
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 8.5e-28 127.9 190 40.5
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.1e-27 127.5 208 39.9
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.1e-27 127.5 197 42.1
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 1.5e-27 127.1 193 39.9
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 2.5e-27 126.3 204 40.2
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 7.2e-27 124.8 205 40.0
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 7.2e-27 124.8 204 40.2
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 1.2e-26 124.0 190 40.5
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.6e-26 123.6 189 40.7
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 8.0e-26 121.3 187 41.7
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.4e-25 120.6 205 40.0
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 1.8e-25 120.2 204 39.7
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 5.2e-25 118.6 195 35.9
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 6.8e-25 118.2 204 39.2
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 8.8e-25 117.9 194 38.1
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 8.8e-25 117.9 198 38.4
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 1.2e-24 117.5 196 39.3
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 3.4e-24 115.9 192 41.7
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 3.4e-24 115.9 219 34.2
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 7.5e-24 114.8 197 39.6
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.3e-23 114.0 218 33.9
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 1.7e-23 113.6 188 39.4
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 1.7e-23 113.6 202 35.6
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 2.8e-23 112.8 195 36.9
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 3.7e-23 112.5 185 37.8
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 4.8e-23 112.1 205 38.0
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 6.3e-23 111.7 202 39.1
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 1.1e-22 110.9 197 35.0
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 1.8e-22 110.2 197 36.5
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 2.4e-22 109.8 189 37.6
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 4.1e-22 109.0 185 37.8
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 5.4e-22 108.6 186 38.7
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 9.1e-22 107.8 200 39.0
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 2.7e-21 106.3 182 38.5
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 2.7e-21 106.3 192 38.5
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 4.5e-21 105.5 191 34.6
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 2.3e-20 103.2 204 33.3
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 2.9e-20 102.8 203 35.0
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.1e-19 100.9 193 36.3
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 2.5e-19 99.8 196 35.2
Nn6g35653 Nelumbo nucifera HOM05D005897 ORTHO05D007128 3.3e-19 99.4 217 35.5
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 3.3e-19 99.4 183 37.2
Eucgr.C03289 Eucalyptus grandis HOM05D005897 ORTHO05D007128 1.6e-18 97.1 198 36.4
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 1.6e-18 97.1 196 35.2
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 2.8e-18 96.3 192 37.5
Nn8g38553 Nelumbo nucifera HOM05D005897 ORTHO05D007128 2.8e-18 96.3 219 32.4
Actinidia29946 Actinidia chinensis HOM05D005897 ORTHO05D007128 1.4e-17 94.0 199 35.7
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 2.3e-17 93.2 181 37.6
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 3.0e-17 92.8 186 36.6
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 3.0e-17 92.8 190 36.3
Lsat_1_v5_gn_5_139320 Lactuca sativa HOM05D005897 ORTHO05D007128 4.0e-17 92.4 211 32.7
Migut.L01590 Erythranthe guttata HOM05D005897 ORTHO05D007128 6.8e-17 91.7 195 35.4
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 8.9e-17 91.3 193 32.6
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 1.2e-16 90.9 199 34.7
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 3.4e-16 89.4 188 35.6
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 9.8e-16 87.8 197 33.5
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 1.8e-14 83.6 191 35.1
AUR62028279 Chenopodium quinoa HOM05D005897 ORTHO05D007128 9.2e-14 81.3 187 34.8
Dinv25518 Davidia involucrata HOM05D005897 ORTHO05D007128 2.0e-13 80.1 85 51.8
PGSC0003DMG400013552 Solanum tuberosum HOM05D005897 ORTHO05D007128 2.0e-13 80.1 191 32.5
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 3.6e-10 69.3 186 32.3
Lalb_Chr23g0276271 Lupinus albus HOM05D005897 ORTHO05D007128 5.2e-09 65.5 195 30.3
Actinidia38489 Actinidia chinensis HOM05D005897 ORTHO05D007128 1.3e-07 60.8 149 32.2
vmacro15871 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 1.3e-07 60.8 44 63.6
Rhsim03G0226200 Rhododendron simsii HOM05D005897 ORTHO05D007128 2.2e-07 60.1 150 34.7
Os09g0438100 Oryza sativa ssp. japonica HOM05D041184 ORTHO05D037194 3.7e-07 59.3 213 26.3
ATR0681G234 Amborella trichopoda HOM05D005897 ORTHO05D007128 2.4e-06 56.6 215 27.9
DCAR_011924 Daucus carota HOM05D005897 ORTHO05D007128 3.2e-06 56.2 187 28.9


User provided reference genes

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