Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 3.8e-108 394.8 196 100.0
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 5.0e-100 367.9 193 92.2
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 9.4e-99 363.6 193 91.7
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 8.3e-95 350.5 194 87.6
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 4.0e-89 331.6 196 83.2
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 6.8e-89 330.9 194 85.1
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.4e-86 322.4 196 82.7
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 3.1e-86 322.0 194 83.0
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.6e-85 319.7 194 82.0
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.6e-85 319.7 194 82.0
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 7.8e-85 317.4 195 82.6
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 8.0e-82 307.4 196 81.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.0e-81 305.1 194 80.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.8e-81 304.3 194 80.9
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 1.1e-75 287.0 199 73.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 9.5e-75 283.9 209 72.2
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 5.2e-73 278.1 241 63.9
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.2e-72 276.9 197 72.1
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.2e-71 272.7 207 68.1
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.9e-71 272.3 203 70.9
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 6.4e-71 271.2 197 71.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 4.1e-70 268.5 209 67.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 5.4e-70 268.1 194 70.1
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 5.4e-70 268.1 204 70.1
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 9.2e-70 267.3 191 71.7
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.2e-69 266.9 206 69.4
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.2e-69 266.9 202 67.3
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 2.7e-69 265.8 197 71.6
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.5e-69 265.4 200 69.5
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.5e-69 265.4 205 69.8
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 3.5e-69 265.4 204 68.1
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.6e-69 265.0 206 68.9
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 4.6e-69 265.0 202 70.3
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 4.6e-69 265.0 210 68.1
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.0e-69 264.6 209 68.4
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.0e-69 264.6 203 69.0
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.3e-68 263.5 205 68.8
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.7e-68 263.1 202 66.8
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.3e-68 262.7 204 69.6
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.3e-68 262.7 199 70.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.0e-68 262.3 207 69.1
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 3.0e-68 262.3 201 69.2
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.0e-68 261.5 203 68.5
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 6.6e-68 261.2 210 67.6
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 6.6e-68 261.2 205 68.8
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.1e-67 260.4 202 69.3
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.5e-67 260.0 212 67.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.5e-67 260.0 210 65.7
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.5e-67 260.0 205 68.8
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.9e-67 259.6 201 68.7
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.5e-67 259.2 199 69.8
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.5e-67 259.2 192 69.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 4.3e-67 258.5 210 65.7
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 7.3e-67 257.7 203 68.0
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.6e-66 256.5 208 67.3
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 2.1e-66 256.1 201 69.7
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 6.2e-66 254.6 193 69.9
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 6.2e-66 254.6 196 68.4
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 6.2e-66 254.6 199 68.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.1e-65 253.8 195 70.8
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.4e-65 253.4 203 68.0
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.8e-65 253.1 212 64.6
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.8e-65 253.1 209 64.1
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.3e-65 252.7 206 64.6
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.2e-65 251.5 205 65.4
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.2e-65 251.5 206 65.0
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 2.6e-64 249.2 200 67.5
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 3.4e-64 248.8 170 74.1
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.3e-63 246.9 209 63.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.7e-63 246.5 193 68.4
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.7e-63 246.5 206 65.0
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 2.2e-63 246.1 189 68.3
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 6.4e-63 244.6 132 87.1
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.1e-62 243.8 132 85.6
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.4e-62 243.4 134 83.6
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.4e-62 243.4 196 67.3
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.9e-62 243.0 202 64.4
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.4e-62 242.7 201 66.7
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.2e-62 242.3 197 66.0
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.1e-62 241.9 192 66.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 5.4e-62 241.5 186 69.4
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 7.1e-62 241.1 186 68.3
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 9.2e-62 240.7 196 65.8
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.2e-61 240.4 188 67.6
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.1e-61 239.6 193 66.3
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 6.0e-61 238.0 197 66.0
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 6.0e-61 238.0 197 65.5
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.0e-60 237.3 213 61.5
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 3.9e-60 235.3 189 64.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.9e-59 233.0 203 64.5
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 4.3e-59 231.9 146 78.8
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.3e-59 231.9 146 78.8
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 5.6e-59 231.5 206 60.7
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 7.3e-59 231.1 203 62.6
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 1.6e-58 229.9 203 64.0
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 3.6e-58 228.8 150 76.7
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.7e-58 228.4 146 78.1
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.1e-57 225.7 199 62.8
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 4.0e-57 225.3 157 72.0
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.2e-57 224.9 151 77.5
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.9e-57 224.2 120 86.7
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.0e-56 223.0 176 66.5
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 3.8e-55 218.8 146 71.9
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 3.8e-55 218.8 171 67.3
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 4.9e-55 218.4 111 88.3
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.6e-53 213.4 207 60.4
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.6e-53 213.4 191 60.2
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 5.1e-52 208.4 204 60.8
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 5.1e-52 208.4 121 76.0
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-51 206.5 126 77.8
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 3.6e-50 202.2 117 80.3
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.8e-49 199.9 153 70.6
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 3.1e-49 199.1 203 56.7
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.2e-48 197.2 204 54.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.9e-47 192.6 107 82.2
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.7e-45 186.0 158 63.9
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.5e-45 185.7 100 86.0
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 1.9e-43 179.9 161 62.7
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 4.3e-43 178.7 90 90.0
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 2.5e-35 152.9 82 81.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.5e-30 136.3 207 43.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 2.5e-30 136.3 105 57.1
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 8.7e-28 127.9 124 61.3
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 5.3e-25 118.6 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 2.6e-24 116.3 93 54.8
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.4e-24 115.9 123 56.1
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.9e-22 110.2 106 50.0
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 3.0e-20 102.8 205 41.0
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 4.8e-18 95.5 83 55.4
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-13 80.1 50 76.0
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 1.8e-12 77.0 127 33.9
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.2e-10 70.1 85 44.7
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.7e-10 69.3 35 82.9
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 3.4e-08 62.8 83 44.6
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.8e-07 59.3 106 42.5
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.1e-06 57.8 28 85.7


User provided reference genes

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