Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.0e-105 386.7 196 100.0
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 3.0e-97 358.6 196 92.3
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.8e-94 349.4 198 90.9
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 7.0e-94 347.4 198 91.4
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.2e-93 346.7 197 87.8
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.6e-93 346.3 198 91.4
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.6e-93 346.3 199 89.9
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 7.7e-93 344.0 197 87.8
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.7e-92 342.8 198 88.9
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 2.3e-92 342.4 193 90.2
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 2.3e-92 342.4 197 86.8
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 2.3e-92 342.4 193 90.2
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 8.6e-92 340.5 198 86.9
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.5e-91 339.0 194 90.2
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 3.6e-90 335.1 194 89.2
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.0e-89 333.6 184 91.3
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.2e-88 330.1 194 88.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 4.9e-87 324.7 202 81.7
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.1e-82 309.3 192 81.8
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.2e-77 293.5 197 76.6
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 2.5e-67 259.2 195 64.1
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 4.7e-66 255.0 194 64.4
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.2e-66 254.6 199 66.3
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 8.1e-66 254.2 194 63.9
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 3.1e-65 252.3 193 62.2
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 4.0e-65 251.9 193 66.3
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 5.2e-65 251.5 188 63.8
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 8.9e-65 250.8 190 65.8
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 8.9e-65 250.8 192 65.6
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.2e-64 250.4 191 62.8
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.2e-64 250.4 185 66.5
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.5e-64 250.0 191 63.9
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.5e-64 250.0 193 65.8
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 4.4e-64 248.4 195 63.6
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-63 246.9 202 62.9
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 2.2e-63 246.1 196 64.3
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.2e-63 246.1 194 61.3
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 2.2e-63 246.1 197 65.0
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 2.9e-63 245.7 195 62.6
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 6.4e-63 244.6 192 62.5
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.3e-63 244.2 194 60.8
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 8.3e-63 244.2 190 65.3
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 8.3e-63 244.2 191 61.3
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.1e-62 243.8 190 63.7
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.1e-62 243.8 186 67.2
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 2.4e-62 242.7 191 63.4
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 3.2e-62 242.3 199 59.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-62 241.9 194 60.8
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 4.1e-62 241.9 195 64.1
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 7.1e-62 241.1 189 63.0
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 7.1e-62 241.1 200 61.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.2e-62 240.7 198 61.6
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.2e-61 240.4 186 65.6
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.6e-61 240.0 191 63.4
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.6e-61 240.0 196 61.2
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.7e-61 239.2 191 61.3
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.5e-61 238.8 191 61.3
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 6.0e-61 238.0 194 60.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 6.0e-61 238.0 198 59.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 6.0e-61 238.0 199 63.8
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.0e-60 237.3 191 60.7
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.7e-60 236.5 193 61.7
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 2.3e-60 236.1 191 60.7
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 3.0e-60 235.7 198 60.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.9e-60 235.3 195 60.5
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 8.6e-60 234.2 188 61.2
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.5e-59 233.4 192 60.9
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.3e-59 231.9 204 60.3
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 5.6e-59 231.5 194 60.8
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 7.3e-59 231.1 194 60.8
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 9.5e-59 230.7 189 60.3
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.2e-58 230.3 187 60.4
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.7e-58 228.4 198 58.6
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 6.2e-58 228.0 190 60.0
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 1.4e-57 226.9 186 60.8
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.4e-57 226.9 187 63.1
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.8e-57 226.5 189 58.7
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 4.0e-57 225.3 191 60.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 2.6e-56 222.6 252 48.8
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 5.8e-56 221.5 194 58.2
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.3e-55 220.3 225 52.9
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.3e-55 220.3 241 51.5
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 3.2e-54 215.7 191 56.5
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 5.4e-54 214.9 191 59.2
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 7.1e-54 214.5 273 44.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 3.9e-52 208.8 147 66.0
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.1e-51 207.2 198 57.1
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 5.6e-51 204.9 195 57.4
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-50 203.8 160 61.2
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.1e-50 203.0 189 52.9
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 1.8e-49 199.9 142 66.9
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 4.4e-48 195.3 146 65.8
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 4.4e-48 195.3 232 49.6
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 3.8e-47 192.2 195 53.3
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 1.9e-46 189.9 187 54.5
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.9e-46 189.9 299 41.1
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 6.0e-45 184.9 195 53.3
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 3.9e-44 182.2 185 50.3
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 7.3e-43 177.9 152 59.9
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 7.3e-43 177.9 154 58.4
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.6e-42 175.6 148 60.8
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.1e-41 172.6 342 36.3
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.9e-39 166.0 198 46.0
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.1e-38 164.1 192 46.4
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 7.1e-38 161.4 123 65.9
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.2e-37 160.6 199 45.7
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.1e-37 159.8 146 52.7
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.3e-36 157.1 121 63.6
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 5.6e-35 151.8 189 43.9
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 1.4e-33 147.1 194 45.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 6.9e-33 144.8 109 66.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 9.3e-30 134.4 104 64.4
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 4.8e-26 122.1 98 62.2
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.4e-25 120.6 92 60.9
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.7e-23 113.6 98 55.1
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.2e-23 113.2 121 49.6
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.2e-22 109.4 136 48.5
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 3.2e-22 109.4 195 37.4
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.8e-18 96.3 150 36.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 9.0e-17 91.3 56 83.9
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 9.0e-17 91.3 78 55.1
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.5e-16 90.5 54 85.2
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.5e-16 90.5 54 85.2
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.5e-16 90.5 75 58.7
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.1e-14 84.3 69 59.4
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.4e-14 84.0 203 32.5
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-13 80.1 89 47.2
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 3.6e-13 79.3 90 45.6
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.0e-12 77.8 190 33.2
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-12 76.3 89 42.7
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-11 74.3 89 42.7
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 4.3e-11 72.4 56 60.7
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 5.7e-11 72.0 70 57.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 1.7e-10 70.5 57 63.2
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.3e-10 68.6 52 59.6
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.6e-08 63.2 86 45.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.9e-08 62.0 49 59.2


User provided reference genes

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