Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 5.0e-108 394.4 198 100.0
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.8e-98 362.1 198 89.9
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 8.9e-97 357.1 198 88.4
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 2.0e-96 355.9 198 88.4
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.7e-95 352.8 198 86.4
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.9e-95 352.1 198 87.9
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.4e-94 349.7 198 85.9
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 4.1e-94 348.2 197 84.8
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 5.4e-94 347.8 198 85.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.5e-93 345.1 196 84.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 3.9e-92 341.7 198 84.8
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.8e-87 325.1 178 88.8
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 6.4e-87 324.3 197 78.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.9e-86 322.8 197 78.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.3e-84 316.6 197 75.1
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.3e-84 315.8 197 76.1
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 9.6e-83 310.5 197 74.6
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 71.7
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 70.2
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 67.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 69.7
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 70.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 67.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 7.1e-78 294.3 196 68.4
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 70.7
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 69.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 68.2
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 71.4
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 67.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.5e-77 292.0 197 69.0
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 7.9e-77 290.8 196 67.9
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 69.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.7e-76 289.7 197 68.0
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 67.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 68.7
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 67.2
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 66.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 68.2
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.1e-76 288.1 195 68.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 6.6e-76 287.7 197 68.5
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 6.6e-76 287.7 195 68.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 67.7
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 8.7e-76 287.3 198 67.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 8.7e-76 287.3 197 70.6
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 68.7
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.9e-75 286.2 198 65.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.5e-75 285.8 197 69.0
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 70.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 68.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 66.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 4.3e-75 285.0 197 69.0
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 67.2
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 7.3e-75 284.3 198 66.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.6e-75 283.9 196 67.3
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 70.2
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 67.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.6e-74 283.1 197 66.5
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.8e-74 282.3 197 69.5
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.2e-74 281.2 198 66.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 8.1e-74 280.8 196 71.4
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 8.1e-74 280.8 198 65.7
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 8.1e-74 280.8 197 65.5
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.4e-73 279.3 183 69.4
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 2.4e-73 279.3 198 64.6
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.4e-73 279.3 197 66.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 3.1e-73 278.9 198 67.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.1e-73 278.9 188 70.2
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.0e-73 278.5 197 65.5
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 4.0e-73 278.5 198 64.1
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 5.3e-73 278.1 198 67.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 183 68.3
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 5.3e-73 278.1 197 66.0
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 9.0e-73 277.3 198 67.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 66.7
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.4e-72 275.4 198 66.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.4e-72 275.4 196 63.8
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 7.6e-72 274.2 198 62.1
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.3e-71 273.5 198 65.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.7e-71 273.1 199 64.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.7e-71 273.1 196 65.3
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.2e-71 272.7 198 63.6
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.2e-71 272.7 191 66.0
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.9e-71 272.3 186 68.8
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.8e-71 271.9 198 65.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 3.8e-71 271.9 198 65.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.8e-71 271.9 195 66.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 8.4e-71 270.8 198 66.2
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.4e-70 270.0 198 64.6
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 1.4e-70 270.0 198 65.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.4e-70 270.0 198 64.6
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.9e-70 269.6 198 65.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.9e-70 269.6 198 63.6
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 65.7
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 3.2e-70 268.9 198 63.6
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.2e-70 268.9 184 66.8
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 4.2e-70 268.5 186 67.2
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 4.2e-70 268.5 183 68.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 9.3e-70 267.3 199 62.8
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.1e-69 266.2 198 63.6
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-69 266.2 184 66.3
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.1e-69 266.2 184 66.3
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 7.9e-69 264.2 194 64.9
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.0e-68 263.8 186 67.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.3e-68 263.5 198 63.1
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-68 263.5 198 62.6
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 5.1e-68 261.5 198 61.1
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 2.5e-67 259.2 198 61.1
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 5.6e-67 258.1 196 60.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.1e-66 256.1 197 59.4
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.1e-66 256.1 198 57.6
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 3.7e-66 255.4 197 62.9
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 6.2e-66 254.6 198 61.1
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.8e-65 253.1 199 62.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 4.0e-65 251.9 198 60.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.2e-64 250.4 187 59.9
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 3.4e-64 248.8 198 57.6
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 7.6e-64 247.7 144 76.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 4.9e-63 245.0 180 63.9
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.5e-59 233.4 144 72.9
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 3.3e-59 232.3 188 60.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.6e-58 229.9 170 64.1
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.4e-57 226.9 191 55.5
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 6.9e-57 224.6 183 58.5
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.1e-53 213.0 169 58.6
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.8e-52 209.9 187 51.9
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.0e-52 209.1 155 64.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.3e-51 205.3 142 64.1
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 1.4e-49 200.3 159 56.0
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 5.0e-47 191.8 144 56.2
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.9e-46 189.9 198 46.5
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.2e-45 187.2 197 50.3
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 7.4e-43 177.9 114 68.4
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.7e-39 166.8 125 63.2
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.2e-38 161.4 190 46.3
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.7e-37 159.5 98 70.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 2.7e-37 159.5 184 47.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 7.9e-37 157.9 198 44.4
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 5.7e-35 151.8 198 44.9
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 3.1e-33 146.0 180 44.4
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.3e-25 118.6 194 40.2
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 2.0e-24 116.7 107 50.5
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 2.7e-24 116.3 184 33.7
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 7.7e-24 114.8 83 56.6
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.2e-21 107.5 85 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.2e-20 102.1 115 45.2
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.2e-18 96.7 115 43.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.7e-16 89.7 71 54.9
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.5e-15 85.1 64 56.2
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.8e-12 77.0 58 62.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 2.4e-09 66.6 62 50.0
A03p68120 Brassica napus HOM05D004375 ORTHO05D008558 8.6e-07 58.2 38 76.3
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 8.6e-07 58.2 133 25.6
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.9e-06 57.0 41 68.3
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.9e-06 57.0 44 61.4
Cre03.g145247 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 4.3e-06 55.8 131 26.7
BolC9t59603H Brassica oleracea HOM05D004717 ORTHO05D005636 5.6e-06 55.5 87 40.2
A01p02140 Brassica napus HOM05D040038 ORTHO05D033345 7.3e-06 55.1 40 75.0


User provided reference genes

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