Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.1e-110 403.3 209 100.0
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 1.1e-105 386.7 212 96.2
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 4.2e-105 384.8 212 95.3
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 4.2e-105 384.8 212 95.3
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.6e-104 382.9 212 95.3
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 3.0e-103 378.6 213 93.9
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 3.0e-103 378.6 212 95.3
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 1.1e-102 376.7 214 93.5
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 3.7e-101 371.7 220 90.0
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 3.7e-101 371.7 220 90.0
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 2.4e-100 369.0 216 90.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 3.1e-100 368.6 211 93.4
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.5e-99 365.2 216 89.4
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 5.9e-99 364.4 223 87.0
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 3.8e-98 361.7 217 88.5
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 1.5e-97 359.8 209 89.0
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 9.4e-97 357.1 213 89.2
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 3.6e-88 328.6 209 83.3
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.3e-82 309.3 215 80.5
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 8.0e-80 300.8 201 77.1
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 5.4e-68 261.5 205 68.8
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 7.0e-68 261.2 209 66.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 1.2e-67 260.4 199 70.9
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 1.6e-67 260.0 204 68.1
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 4.6e-67 258.5 205 67.3
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 6.0e-67 258.1 208 67.3
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 7.8e-67 257.7 205 67.8
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.8e-67 257.7 208 64.9
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 1.0e-66 257.3 203 67.5
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 1.0e-66 257.3 200 68.5
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.3e-66 256.9 206 68.0
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.7e-66 256.5 208 64.9
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.0e-66 255.8 200 67.0
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 3.9e-66 255.4 205 65.4
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.0e-66 255.0 202 67.8
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.6e-66 254.2 208 63.9
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.6e-66 254.2 208 63.9
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.1e-65 253.8 200 69.0
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-65 253.8 206 64.1
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.5e-65 253.4 207 66.2
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.9e-65 253.1 199 68.3
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 4.3e-65 251.9 202 66.8
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 7.3e-65 251.1 209 63.2
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 7.3e-65 251.1 209 63.2
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.3e-65 251.1 209 64.1
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 7.3e-65 251.1 209 64.1
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.2e-64 250.4 205 66.8
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.8e-64 249.2 209 63.2
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 2.8e-64 249.2 208 65.9
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 3.6e-64 248.8 209 62.7
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 3.6e-64 248.8 205 64.9
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.1e-63 247.3 209 63.2
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 1.1e-63 247.3 208 64.4
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.4e-63 246.9 205 66.8
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 1.4e-63 246.9 207 66.2
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.4e-63 246.9 204 65.2
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 3.1e-63 245.7 213 62.0
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 4.0e-63 245.4 201 63.2
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 4.0e-63 245.4 200 68.0
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 5.2e-63 245.0 205 63.9
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 1.2e-62 243.8 189 67.2
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.2e-62 243.8 205 64.9
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 1.5e-62 243.4 213 62.9
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 1.5e-62 243.4 202 64.9
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 2.0e-62 243.0 199 63.8
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 2.6e-62 242.7 202 65.8
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.6e-62 242.7 195 65.6
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 2.6e-62 242.7 212 63.7
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 2.6e-62 242.7 211 63.0
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 3.4e-62 242.3 208 61.5
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 4.4e-62 241.9 214 61.7
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 9.8e-62 240.7 198 62.6
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 9.8e-62 240.7 199 66.3
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 9.8e-62 240.7 202 64.9
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.7e-61 240.0 206 61.7
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 1.7e-61 240.0 202 63.4
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.7e-61 240.0 199 64.8
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.2e-61 239.6 199 63.3
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.2e-61 239.6 199 62.8
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.9e-61 239.2 215 62.3
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.9e-61 239.2 209 62.7
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 6.4e-61 238.0 209 62.7
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 6.4e-61 238.0 207 62.3
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.4e-60 236.9 208 62.5
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.9e-60 236.5 182 64.8
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.6e-59 233.4 201 62.7
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.5e-59 232.3 208 61.5
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 6.0e-59 231.5 196 63.8
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 2.3e-58 229.6 237 57.0
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 6.6e-58 228.0 201 61.2
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.1e-57 227.3 191 61.8
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 1.2e-56 223.8 204 61.3
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 2.8e-56 222.6 208 59.1
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 4.7e-56 221.9 203 61.6
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 8.1e-56 221.1 209 58.9
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 8.9e-55 217.6 168 64.3
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-54 217.2 155 68.4
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-54 217.2 155 68.4
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 3.4e-54 215.7 203 57.1
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 3.7e-53 212.2 201 56.2
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 2.1e-51 206.5 161 68.3
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 6.6e-50 201.4 182 58.2
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 8.6e-50 201.1 161 65.2
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 6.2e-48 194.9 157 62.4
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.3e-45 187.2 141 72.3
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 5.4e-44 181.8 362 36.5
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 2.7e-43 179.5 157 59.9
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 2.5e-41 172.9 191 52.9
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.8e-40 169.5 128 67.2
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 4.0e-39 165.6 132 64.4
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 2.2e-37 159.8 89 87.6
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 7.1e-36 154.8 190 44.7
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 4.6e-35 152.1 124 71.8
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.5e-33 147.1 119 68.9
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.3e-33 145.6 136 57.4
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 4.3e-33 145.6 191 41.4
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 5.6e-33 145.2 109 67.0
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 9.0e-31 137.9 129 61.2
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 5.8e-30 135.2 109 66.1
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 6.4e-29 131.7 121 56.2
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 2.8e-24 116.3 192 34.9
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 4.0e-23 112.5 135 49.6
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 5.3e-23 112.1 76 76.3
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 4.2e-20 102.4 127 48.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.3e-18 96.7 74 71.6
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 9.6e-17 91.3 74 64.9
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 4.0e-15 85.9 76 67.1
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 3.2e-12 76.3 59 61.0
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 5.5e-12 75.5 186 29.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.1e-12 75.1 47 76.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 6.7e-10 68.6 55 60.0
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 1.2e-06 57.8 59 49.2


User provided reference genes

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