Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 5.3e-116 421.0 209 100.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.5e-113 412.1 209 97.1
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.2e-113 411.4 209 96.7
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.6e-112 408.3 209 95.7
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 7.9e-112 407.1 207 97.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 7.9e-112 407.1 207 97.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-111 404.4 207 95.7
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.1e-111 404.4 207 95.7
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.1e-111 404.4 207 95.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.5e-110 402.9 209 94.7
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.0e-110 402.5 207 95.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.3e-110 401.7 209 93.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 7.4e-110 400.6 207 95.2
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 9.7e-110 400.2 207 94.7
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 2.2e-109 399.1 207 94.2
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.8e-109 398.7 209 93.8
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 3.7e-109 398.3 207 94.2
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 9.1e-108 393.7 209 91.9
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 5.9e-107 391.0 209 90.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 5.9e-107 391.0 209 90.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.2e-106 389.0 219 86.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 8.5e-106 387.1 203 92.6
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.2e-103 377.9 209 88.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 3.6e-88 328.6 203 76.4
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 4.7e-88 328.2 206 76.2
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.0e-87 327.0 203 76.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.4e-87 326.6 202 76.7
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.2e-86 323.6 202 75.7
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.6e-86 322.4 202 75.2
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.4e-86 322.0 202 75.2
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 5.7e-86 321.2 197 75.6
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.8e-85 318.9 202 75.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.7e-83 312.4 203 72.9
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 5.9e-83 311.2 193 76.2
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.3e-82 309.3 203 72.4
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.8e-82 308.5 203 72.4
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 5.0e-82 308.1 202 72.8
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.0e-82 308.1 203 71.4
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.6e-82 307.4 203 72.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.6e-82 307.4 207 72.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 70.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.9e-81 306.2 207 71.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.9e-81 306.2 207 72.9
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 72.9
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 72.2
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 70.9
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 3.3e-81 305.4 205 71.7
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 3.3e-81 305.4 205 71.7
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.2e-81 305.1 203 70.4
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.2e-81 305.1 203 72.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 7.2e-81 304.3 206 73.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 9.5e-81 303.9 203 70.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.5e-81 303.9 203 70.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 9.5e-81 303.9 201 70.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 69.6
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 71.0
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 202 71.8
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 71.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 71.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 71.4
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.6e-80 303.1 206 73.8
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 71.4
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 6.1e-80 301.2 207 72.5
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.0e-79 300.4 224 66.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 70.4
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.3e-79 299.3 204 70.1
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.4
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 3.0e-79 298.9 207 71.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 4.0e-79 298.5 203 71.9
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 4.0e-79 298.5 207 70.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.2e-79 298.1 207 70.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 6.8e-79 297.7 207 72.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.9e-79 297.4 200 70.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.2e-78 297.0 204 69.1
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 2.0e-78 296.2 203 72.4
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.0e-78 296.2 205 72.2
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.4e-78 295.0 205 68.8
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 4.9e-77 291.6 207 69.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.9e-77 291.6 204 71.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 68.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.4e-76 290.0 202 68.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.4e-76 290.0 203 70.4
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 7.0e-76 287.7 202 66.8
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 9.2e-76 287.3 203 70.0
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.2e-75 287.0 203 69.5
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.6e-75 286.6 260 58.8
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.0e-75 286.2 201 68.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.0e-75 286.2 204 68.6
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.5e-75 285.4 204 68.1
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 5.9e-75 284.6 204 66.2
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 7.8e-75 284.3 204 68.1
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-74 283.1 203 64.5
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.7e-74 283.1 199 69.3
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.9e-74 282.0 204 65.7
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 5.0e-74 281.6 203 69.5
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 6.6e-74 281.2 204 68.1
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.5e-73 280.0 210 65.7
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.9e-73 279.6 203 65.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.3e-73 278.9 205 68.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 3.3e-73 278.9 204 69.1
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 3.3e-73 278.9 206 68.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 7.3e-73 277.7 193 67.4
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 9.5e-73 277.3 208 65.9
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.2e-72 276.9 203 68.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.2e-72 276.9 205 68.8
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 4.7e-72 275.0 203 66.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.5e-70 270.0 210 64.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.6e-70 269.2 203 66.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.6e-70 269.2 208 62.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.4e-70 268.5 203 65.5
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.5e-70 267.7 203 63.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.4e-68 263.5 204 62.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.4e-68 262.7 203 65.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.4e-68 262.7 205 59.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.1e-65 253.8 199 58.8
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.1e-63 247.3 206 60.2
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.8e-63 246.5 204 55.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.1e-63 245.7 194 61.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.6e-59 233.4 208 53.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 2.7e-59 232.6 154 74.7
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 3.1e-55 219.2 212 51.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 5.2e-55 218.4 212 51.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 4.4e-54 215.3 203 53.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.4e-52 210.3 203 54.7
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.4e-52 210.3 138 73.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.9e-52 209.9 145 70.3
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.9e-49 199.9 140 72.1
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.9e-47 191.0 152 65.8
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-46 190.3 140 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 2.7e-43 179.5 207 46.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.8e-43 177.9 132 66.7
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.6e-40 169.1 135 60.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.1e-36 154.8 184 48.4
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.1e-28 131.0 195 36.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 5.4e-28 128.6 199 40.7
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-26 124.0 99 61.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 2.5e-25 119.8 132 47.0
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.6e-22 109.8 203 36.5
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.4e-22 109.4 52 96.2
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.9e-21 105.5 77 62.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 8.4e-21 104.8 69 73.9
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.7e-19 99.8 66 66.7
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-19 99.4 137 43.1
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-18 97.4 66 69.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.3e-17 92.8 67 65.7
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 9.3e-12 74.7 42 78.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.3e-10 70.9 70 60.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.7e-09 65.5 48 60.4
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.7e-09 65.5 48 60.4
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.3e-08 64.3 118 33.1
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 1.6e-08 63.9 38 89.5
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.2e-06 57.8 36 69.4
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.2e-06 57.8 42 54.8


User provided reference genes

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