Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 8.8e-119 430.3 210 100.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 2.0e-110 402.5 210 95.2
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 2.6e-110 402.1 210 94.8
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 3.3e-110 401.7 210 94.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 9.7e-110 400.2 210 93.8
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.3e-109 399.8 210 93.8
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 4.8e-109 397.9 210 93.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.8e-108 396.0 210 93.3
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.8e-108 396.0 206 94.7
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.7e-107 392.1 204 94.1
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 2.7e-107 392.1 204 94.1
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.7e-106 389.4 210 91.4
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.1e-105 386.7 208 92.8
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.2e-101 372.5 209 87.1
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.8e-95 352.8 208 81.7
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.3e-93 346.7 184 91.8
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.3e-93 346.7 209 79.4
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.1e-92 343.6 208 81.2
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.1e-92 343.6 208 81.2
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.4e-92 343.2 208 80.8
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 3.2e-92 342.0 208 79.8
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 4.1e-92 341.7 209 78.5
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 9.2e-92 340.5 209 81.3
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 77.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.6e-91 339.7 209 78.0
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 2.0e-91 339.3 208 77.9
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 5.9e-91 337.8 209 78.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.0e-90 337.0 208 77.4
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.0e-90 337.0 208 77.4
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.3e-90 336.7 204 79.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.9e-90 335.1 204 77.9
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 5.0e-90 334.7 208 78.8
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.1e-89 333.6 209 78.9
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.5e-89 333.2 211 78.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.3e-89 332.0 208 78.4
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 4.3e-89 331.6 210 77.1
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 4.3e-89 331.6 209 78.5
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 5.6e-89 331.3 210 76.2
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 7.3e-89 330.9 209 75.6
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 7.3e-89 330.9 209 76.6
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 7.3e-89 330.9 211 76.8
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 2.1e-88 329.3 211 76.8
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 2.1e-88 329.3 210 76.7
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 2.8e-88 328.9 210 76.2
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 3.6e-88 328.6 209 77.5
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 4.7e-88 328.2 208 76.4
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 6.1e-88 327.8 209 75.6
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 8.0e-88 327.4 209 76.6
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.0e-87 327.0 208 75.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.4e-87 326.6 208 76.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.4e-87 326.6 208 75.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.8e-87 326.2 207 75.4
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.8e-87 326.2 206 78.2
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.3e-87 325.9 209 75.1
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.3e-87 325.9 206 77.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 2.3e-87 325.9 209 76.1
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 5.2e-87 324.7 203 77.8
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 6.8e-87 324.3 203 77.3
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 8.9e-87 323.9 204 76.5
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 8.9e-87 323.9 210 75.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.2e-86 323.6 208 75.0
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.2e-86 323.6 208 74.5
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.0e-86 322.8 204 77.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.0e-86 322.8 210 75.7
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 4.4e-86 321.6 209 74.6
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 5.8e-86 321.2 209 74.6
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 5.8e-86 321.2 206 76.2
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 5.8e-86 321.2 211 74.4
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.7e-85 319.7 204 76.5
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.7e-85 319.7 206 75.2
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.2e-85 319.3 204 77.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 2.2e-85 319.3 209 74.6
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 2.2e-85 319.3 208 76.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.2e-85 319.3 206 75.2
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.9e-85 318.9 209 75.6
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 4.9e-85 318.2 209 75.1
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 6.4e-85 317.8 204 75.5
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 8.3e-85 317.4 203 75.9
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.4e-84 316.6 203 75.4
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.4e-84 316.6 235 67.2
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.9e-84 316.2 206 74.3
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 3.2e-84 315.5 210 75.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 4.1e-84 315.1 199 74.9
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.1e-84 315.1 206 75.2
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.4e-84 314.7 221 72.4
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 5.4e-84 314.7 203 76.8
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 5.4e-84 314.7 208 75.5
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 5.4e-84 314.7 209 71.8
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-83 313.5 204 75.5
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-83 313.5 204 75.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.6e-83 313.2 204 76.0
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 4.6e-83 311.6 209 72.7
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 5.0e-82 308.1 208 73.6
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 6.6e-82 307.8 209 73.7
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 6.6e-82 307.8 209 73.7
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 8.6e-82 307.4 204 74.0
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.9e-76 289.7 204 71.1
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.2e-75 287.0 204 70.1
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.0e-74 283.9 204 69.6
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 6.6e-74 281.2 177 75.7
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 6.2e-72 274.6 208 68.3
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.8e-71 273.1 204 65.2
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.3e-71 272.7 205 65.4
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.5e-70 270.0 167 79.6
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.2e-67 260.4 208 61.5
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.1e-65 253.8 206 59.7
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 2.8e-64 249.2 169 72.8
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.7e-64 248.4 204 58.8
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 3.8e-61 238.8 199 59.3
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 9.3e-60 234.2 209 59.3
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.5e-59 232.3 209 58.9
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.6e-59 231.9 166 69.3
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.1e-57 227.3 209 54.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.3e-56 223.8 153 72.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.9e-53 212.6 134 77.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.9e-53 211.8 201 54.2
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 1.2e-51 207.2 149 69.8
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.9e-49 199.9 124 72.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 3.3e-49 199.1 122 78.7
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 4.3e-49 198.7 122 78.7
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 7.3e-49 198.0 151 67.5
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.8e-48 195.3 151 66.9
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 6.0e-43 178.3 103 89.3
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.3e-41 172.6 97 79.4
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.1e-39 166.0 165 52.7
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 3.9e-34 149.1 153 49.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 5.3e-31 138.7 178 44.9
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 5.7e-25 118.6 75 70.7
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 3.7e-24 115.9 75 72.0
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.0e-22 110.2 106 57.5
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 2.0e-22 110.2 203 40.4
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 4.2e-20 102.4 75 66.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 6.1e-19 98.6 60 75.0
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 2.5e-12 76.6 37 91.9
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 2.8e-08 63.2 41 73.2
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 8.2e-08 61.6 38 76.3
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 9.1e-07 58.2 36 75.0


User provided reference genes

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