Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.0e-69 265.8 216 100.0
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.9e-56 222.6 218 73.9
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.9e-53 212.2 219 65.3
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 6.6e-53 211.5 216 58.3
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.5e-52 209.5 216 57.9
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.1e-50 204.1 216 57.4
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 3.1e-50 202.6 230 72.2
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.0e-49 199.9 219 88.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 3.2e-47 192.6 216 78.2
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 5.4e-47 191.8 218 75.7
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.1e-42 177.6 217 50.7
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 7.6e-41 171.4 217 60.4
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 7.6e-41 171.4 216 50.5
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.2e-38 164.1 212 62.7
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.5e-38 162.5 217 49.8
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 6.0e-38 161.8 247 53.4
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.0e-37 161.0 215 63.7
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.1e-36 157.5 215 55.8
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 3.3e-36 156.0 222 44.6
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 7.3e-36 154.8 216 46.8
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.1e-34 151.0 173 49.7
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.1e-34 151.0 173 49.7
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 9.0e-34 147.9 213 45.1
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-33 146.7 213 44.6
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 7.6e-33 144.8 173 50.3
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 7.6e-33 144.8 173 50.3
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 9.9e-33 144.4 174 53.4
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 2.2e-32 143.3 173 49.7
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.7e-30 136.3 91 76.9
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.7e-30 136.3 91 76.9
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 8.1e-27 124.8 219 38.8
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 1.7e-24 117.1 219 37.4
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 4.9e-24 115.5 219 36.5
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 1.1e-23 114.4 225 36.0
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.2e-23 112.8 217 39.2
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 1.2e-22 110.9 220 35.0
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.1e-22 110.2 211 38.4
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.1e-22 110.2 211 36.5
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.1e-22 110.2 215 34.4
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.7e-22 109.8 223 46.6
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.0e-22 108.6 215 34.0
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 7.9e-22 108.2 215 36.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-21 107.5 212 35.4
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.8e-21 107.1 225 36.0
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 2.3e-21 106.7 176 36.4
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 3.9e-21 105.9 221 33.0
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 3.3e-20 102.8 226 35.4
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 4.3e-20 102.4 215 34.9
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 9.6e-20 101.3 204 45.6
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 3.7e-19 99.4 213 32.4
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 3.7e-19 99.4 216 45.8
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 4.8e-19 99.0 218 35.8
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 8.1e-19 98.2 180 35.0
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.1e-18 97.8 194 34.5
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.8e-18 97.1 172 47.7
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.8e-18 97.1 218 34.9
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.4e-18 96.7 174 45.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.1e-18 96.3 233 37.8
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.0e-18 95.9 174 36.2
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 5.3e-18 95.5 188 31.4
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 5.3e-18 95.5 175 54.9
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 6.9e-18 95.1 188 31.9
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 6.9e-18 95.1 188 31.4
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 6.9e-18 95.1 174 55.2
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 9.0e-18 94.7 219 32.4
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 9.0e-18 94.7 190 31.6
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-17 94.4 220 32.7
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.2e-17 94.4 220 32.7
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.2e-17 94.4 182 35.2
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.2e-17 94.4 186 40.9
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 1.5e-17 94.0 235 34.5
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.0e-17 93.6 193 32.6
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 3.4e-17 92.8 174 49.4
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 3.4e-17 92.8 191 30.4
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 5.8e-17 92.0 185 41.1
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.0e-16 91.3 186 31.2
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.3e-16 90.9 205 29.3
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.9e-16 89.7 179 31.3
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 3.8e-16 89.4 57 80.7
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 3.8e-16 89.4 191 33.0
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.5e-16 88.6 192 28.1
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 8.4e-16 88.2 214 31.3
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 8.4e-16 88.2 197 32.5
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.1e-15 87.8 175 33.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 2.5e-15 86.7 175 32.0
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 2.1e-14 83.6 226 31.4
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.1e-14 83.6 188 32.4
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 2.1e-14 83.6 176 38.1
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 2.7e-14 83.2 57 75.4
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 2.7e-14 83.2 57 75.4
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 2.7e-14 83.2 215 30.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.5e-14 82.8 174 32.2
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 4.6e-14 82.4 196 31.1
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 4.6e-14 82.4 196 31.1
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 1.0e-13 81.3 187 31.0
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 1.0e-13 81.3 188 43.1
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.0e-13 81.3 173 28.9
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.3e-13 80.9 216 32.4
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.8e-13 80.5 68 50.0
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 2.3e-13 80.1 92 44.6
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-13 80.1 221 36.7
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.0e-13 79.7 221 37.1
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 3.9e-13 79.3 175 29.1
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 3.9e-13 79.3 179 35.8
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 3.9e-13 79.3 175 28.0
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 5.1e-13 79.0 173 32.9
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 5.1e-13 79.0 91 44.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 6.7e-13 78.6 175 35.4
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 6.7e-13 78.6 167 38.3
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.9e-12 77.0 179 29.6
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 3.3e-12 76.3 173 28.9
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 3.3e-12 76.3 177 39.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 4.3e-12 75.9 180 31.1
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 2.8e-11 73.2 214 25.2
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.1e-10 71.2 62 56.5
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.8e-10 70.5 201 29.4
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.8e-10 70.5 188 25.5
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.8e-10 70.5 209 34.0
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 3.1e-10 69.7 53 62.3
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 3.1e-10 69.7 189 34.4
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 3.1e-10 69.7 91 39.6
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 5.3e-10 68.9 188 30.9
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 6.9e-10 68.6 181 28.2
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.6e-09 66.6 188 29.8
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 4.5e-09 65.9 177 27.7
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.0e-08 64.7 171 26.9
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 2.2e-08 63.5 158 27.8
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 5.0e-08 62.4 40 75.0
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.9e-07 60.5 35 74.3
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.5e-07 60.1 67 44.8
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 7.2e-07 58.5 47 53.2
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 7.2e-07 58.5 87 43.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.2e-06 57.8 72 44.4


User provided reference genes

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