Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 1.2e-134 483.0 224 100.0
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 5.9e-121 437.6 222 91.0
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 1.4e-119 433.0 222 91.0
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 7.2e-119 430.6 222 90.1
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 4.7e-118 427.9 222 89.6
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.4e-117 426.4 227 88.1
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 3.9e-117 424.9 222 88.7
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 8.5e-112 407.1 226 86.3
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 1.9e-111 406.0 226 85.8
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 2.7e-105 385.6 221 78.3
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 4.5e-97 358.2 187 89.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.3e-96 356.7 221 72.9
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 8.5e-96 354.0 184 85.3
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 3.2e-95 352.1 178 89.3
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.6e-94 349.7 178 86.5
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 3.6e-94 348.6 178 88.2
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 3.6e-94 348.6 218 70.6
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 1.4e-93 346.7 178 87.6
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 5.2e-93 344.7 215 73.5
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 1.5e-92 343.2 215 69.3
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.0e-92 342.8 218 70.2
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.0e-92 342.8 218 70.2
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 2.6e-92 342.4 218 69.7
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 9.8e-92 340.5 225 68.9
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 3.7e-91 338.6 216 69.4
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 4.9e-91 338.2 216 68.5
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 3.1e-90 335.5 219 67.6
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 7.0e-90 334.3 222 68.5
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 7.0e-90 334.3 220 67.7
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 9.2e-90 334.0 220 70.0
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 1.2e-89 333.6 218 68.8
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 1.2e-89 333.6 217 68.7
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 2.0e-89 332.8 216 70.4
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 2.0e-89 332.8 225 65.8
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 3.5e-89 332.0 214 67.8
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 3.5e-89 332.0 214 69.2
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 5.9e-89 331.3 217 68.7
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 5.9e-89 331.3 217 69.1
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 1.0e-88 330.5 214 67.8
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 1.7e-88 329.7 217 68.7
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 3.8e-88 328.6 215 69.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 5.0e-88 328.2 217 67.7
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 1.1e-87 327.0 213 69.5
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.1e-87 327.0 218 67.9
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.9e-87 326.2 217 68.2
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 4.3e-87 325.1 217 67.7
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 4.3e-87 325.1 215 68.8
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 5.6e-87 324.7 221 68.3
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 5.6e-87 324.7 225 67.1
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 7.3e-87 324.3 221 65.6
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 9.5e-87 323.9 233 63.5
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.2e-86 323.6 215 67.9
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.1e-86 322.8 216 65.3
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 2.1e-86 322.8 219 67.1
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 2.8e-86 322.4 218 67.4
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 3.6e-86 322.0 217 66.4
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 2.3e-85 319.3 222 67.1
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.0e-85 318.9 219 67.6
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 5.2e-85 318.2 218 66.5
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 8.9e-85 317.4 219 67.1
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 1.2e-84 317.0 219 66.7
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 2.0e-84 316.2 215 64.7
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 5.7e-84 314.7 216 64.4
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 9.8e-84 313.9 225 64.9
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 1.3e-83 313.5 215 65.6
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.7e-83 313.2 219 66.7
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 6.4e-83 311.2 222 63.5
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 8.3e-83 310.8 217 65.4
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.4e-82 310.1 217 65.0
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 2.4e-82 309.3 222 63.1
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 1.2e-81 307.0 222 63.5
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 4.6e-81 305.1 229 63.3
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 5.9e-81 304.7 259 55.6
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.0e-80 303.9 217 63.6
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 2.3e-80 302.8 215 65.1
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 2.3e-80 302.8 213 62.9
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 3.0e-80 302.4 220 62.7
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.5e-79 300.1 187 71.7
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 3.3e-79 298.9 233 61.8
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 3.3e-79 298.9 187 71.1
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 5.6e-79 298.1 213 63.8
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 7.3e-79 297.7 215 62.8
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 9.5e-79 297.4 223 62.8
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 4.7e-78 295.0 225 58.2
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 8.9e-77 290.8 185 71.9
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.2e-76 290.4 187 70.1
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 1.5e-76 290.0 287 52.3
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 7.5e-76 287.7 261 54.8
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 1.4e-74 283.5 220 59.1
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.4e-74 282.7 192 68.8
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 4.6e-73 278.5 191 64.4
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 2.3e-72 276.2 183 69.4
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 3.0e-72 275.8 200 64.5
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 1.1e-71 273.9 185 66.5
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.6e-70 270.0 185 68.1
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.1e-69 267.3 197 61.4
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.4e-69 266.9 182 66.5
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 1.5e-68 263.5 184 66.8
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.6e-68 262.7 218 56.4
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 7.5e-68 261.2 185 64.9
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 7.5e-68 261.2 185 64.9
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 3.7e-67 258.8 182 64.3
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 3.2e-66 255.8 216 60.6
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 1.3e-64 250.4 224 55.8
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 2.5e-63 246.1 194 57.7
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 3.3e-63 245.7 220 54.5
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 3.3e-63 245.7 220 54.5
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 4.3e-63 245.4 191 60.7
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 8.4e-59 231.1 189 56.6
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 2.4e-58 229.6 217 53.0
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 7.1e-50 201.4 215 43.3
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 4.6e-49 198.7 152 61.8
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 8.7e-48 194.5 134 64.2
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 8.7e-48 194.5 127 66.1
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.7e-35 153.7 87 72.4
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 2.7e-33 146.4 74 77.0
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 8.5e-19 98.2 190 37.9
AL8G25960 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 3.6e-09 66.2 36 80.6
CARHR264550 Cardamine hirsuta HOM05D006795 ORTHO05D008573 6.7e-08 62.0 29 89.7
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 1.5e-07 60.8 61 37.7


User provided reference genes

Program Settings