Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 8.0e-118 427.2 227 100.0
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 8.9e-101 370.5 220 88.6
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.2e-100 370.2 220 88.2
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 9.9e-100 367.1 220 87.7
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.3e-99 366.7 220 87.7
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.4e-98 363.2 221 87.8
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 1.0e-96 357.1 220 85.9
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.6e-94 349.7 220 85.5
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.8e-93 346.3 223 81.6
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 3.9e-88 328.6 221 82.8
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 1.1e-87 327.0 221 82.4
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 3.4e-76 288.9 225 71.1
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 8.7e-72 274.2 223 65.0
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.9e-71 273.1 221 62.9
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 2.5e-71 272.7 223 64.1
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 4.3e-71 271.9 221 65.2
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 9.6e-71 270.8 224 64.3
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.6e-70 270.0 220 65.5
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 2.1e-70 269.6 224 64.3
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.8e-70 269.2 221 64.3
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 4.8e-70 268.5 225 62.2
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 4.8e-70 268.5 224 65.2
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.1e-69 267.3 224 62.5
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.1e-69 267.3 220 61.8
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.8e-69 266.5 224 62.1
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 1.8e-69 266.5 226 65.0
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.4e-69 266.2 228 63.6
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 5.3e-69 265.0 221 64.7
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 6.9e-69 264.6 220 64.1
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 6.9e-69 264.6 227 62.6
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 9.0e-69 264.2 229 62.4
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.2e-68 263.8 220 65.0
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 2.6e-68 262.7 223 61.0
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.6e-68 262.7 224 61.6
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 3.4e-68 262.3 224 61.6
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 4.5e-68 261.9 224 61.6
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.3e-67 260.4 223 61.0
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 1.3e-67 260.4 226 62.4
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 1.7e-67 260.0 222 62.6
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 2.2e-67 259.6 221 61.1
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 2.9e-67 259.2 233 62.2
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 5.0e-67 258.5 223 61.9
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 6.5e-67 258.1 220 62.7
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 8.4e-67 257.7 220 61.8
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 1.1e-66 257.3 225 60.9
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.1e-66 257.3 221 62.9
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.4e-66 256.9 222 62.6
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.4e-66 256.9 225 61.3
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.9e-66 256.5 225 61.3
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.5e-66 256.1 226 61.5
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 5.5e-66 255.0 226 60.2
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 5.5e-66 255.0 220 59.1
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 9.3e-66 254.2 221 62.0
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.2e-65 253.8 228 61.0
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.6e-65 253.4 222 64.0
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 2.1e-65 253.1 223 60.1
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 2.7e-65 252.7 234 60.3
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 4.6e-65 251.9 220 61.4
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 6.1e-65 251.5 224 59.4
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 6.1e-65 251.5 220 60.9
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.0e-64 250.8 223 60.5
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.3e-64 250.4 226 59.3
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 6.7e-64 248.1 225 60.9
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 1.6e-62 243.4 224 58.0
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 8.2e-62 241.1 225 59.6
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 1.4e-61 240.4 220 58.6
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.8e-61 240.0 221 59.3
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.1e-61 238.8 220 59.1
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-60 237.3 220 59.5
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 2.0e-60 236.5 221 60.2
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 2.6e-60 236.1 226 59.7
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 4.5e-60 235.3 222 58.6
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.3e-59 233.8 242 54.5
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 2.2e-59 233.0 218 59.6
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 2.9e-59 232.6 220 57.7
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 3.8e-59 232.3 212 58.5
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 1.4e-58 230.3 220 59.1
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.9e-58 229.9 281 49.8
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 2.1e-57 226.5 220 56.8
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 2.7e-57 226.1 228 55.7
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 3.6e-57 225.7 220 55.0
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 1.0e-56 224.2 220 55.0
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 3.0e-56 222.6 253 53.4
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 3.9e-56 222.2 226 57.1
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.0e-55 219.9 220 57.7
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.7e-54 216.9 221 54.8
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.2e-54 216.5 230 54.3
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.8e-54 216.1 220 52.3
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.8e-53 213.4 229 52.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 3.1e-53 212.6 220 55.9
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 5.3e-53 211.8 222 52.7
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 6.9e-53 211.5 226 51.3
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 7.7e-52 208.0 228 53.9
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.3e-51 207.2 228 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 9.4e-50 201.1 230 50.9
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.6e-49 200.3 201 53.7
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 3.6e-49 199.1 224 50.0
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 1.8e-48 196.8 246 48.8
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 2.3e-48 196.4 229 48.0
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 2.0e-47 193.4 222 53.2
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.7e-46 190.3 230 49.6
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 6.3e-46 188.3 212 48.1
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 2.4e-45 186.4 220 48.6
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.9e-42 176.8 206 50.5
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 4.7e-41 172.2 159 56.0
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.5e-39 167.2 164 57.9
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 2.0e-39 166.8 100 83.0
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 2.6e-39 166.4 217 45.6
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.7e-38 163.7 158 56.3
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.7e-38 162.5 158 55.7
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-31 139.4 261 35.6
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 4.4e-31 139.0 93 75.3
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.1e-29 131.3 190 44.7
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 1.1e-26 124.4 114 60.5
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 1.8e-24 117.1 103 60.2
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 3.0e-24 116.3 267 32.2
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.2e-23 114.4 95 62.1
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 5.7e-23 112.1 216 37.0
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 6.3e-22 108.6 136 49.3
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 3.5e-20 102.8 196 36.7
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 1.1e-18 97.8 164 40.9
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.1e-18 97.8 164 40.9
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.3e-18 95.9 74 67.6
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 8.0e-17 91.7 63 69.8
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 4.0e-16 89.4 91 51.6
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 6.8e-16 88.6 93 50.5
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-15 87.8 91 50.5
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 2.9e-14 83.2 91 48.4
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 6.4e-14 82.0 89 51.7
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.2e-12 77.8 67 58.2
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.7e-11 73.9 55 65.5
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 1.9e-10 70.5 79 45.6
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 9.5e-10 68.2 44 75.0
Sc08g0005650 Simmondsia chinensis HOM05D005809 ORTHO05D007259 8.3e-06 55.1 56 51.8


User provided reference genes

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