Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.4e-125 453.0 229 100.0
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 5.1e-112 407.9 229 90.8
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.3e-111 405.2 228 90.4
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.6e-110 402.9 228 90.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.8e-110 402.1 228 89.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.7e-110 401.7 228 89.9
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 8.1e-110 400.6 228 89.5
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 5.3e-109 397.9 227 88.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-108 396.4 228 89.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.5e-108 396.4 228 89.0
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 3.8e-107 391.7 228 89.5
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 8.4e-107 390.6 229 87.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.7e-104 380.9 227 82.8
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.9e-99 364.8 228 81.1
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.9e-96 355.1 228 81.1
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.8e-91 338.6 226 72.6
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.2e-90 335.5 226 73.0
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 3.2e-90 335.5 226 70.8
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.5e-90 334.7 226 72.1
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.2e-89 333.6 227 73.6
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.2e-89 333.6 222 73.4
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.6e-89 331.6 230 70.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 4.6e-89 331.6 225 70.7
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 4.6e-89 331.6 225 73.3
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-88 330.1 226 69.9
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-88 330.1 226 69.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-88 328.9 226 72.1
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 3.9e-88 328.6 226 70.4
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 3.9e-88 328.6 230 70.9
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 6.7e-88 327.8 227 70.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 8.8e-88 327.4 226 70.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 8.8e-88 327.4 231 70.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 3.3e-87 325.5 226 69.9
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 3.3e-87 325.5 226 69.9
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 5.7e-87 324.7 226 70.4
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.7e-87 324.7 226 70.4
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 5.7e-87 324.7 226 72.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.7e-87 324.7 226 70.4
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 7.4e-87 324.3 226 69.5
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.3e-86 323.6 226 69.9
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.7e-86 323.2 227 70.0
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.2e-86 322.8 226 69.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.8e-86 321.6 226 70.4
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 4.8e-86 321.6 223 72.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 6.3e-86 321.2 228 68.4
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.1e-85 320.5 214 73.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 1.1e-85 320.5 226 69.5
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.8e-85 319.7 222 72.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.4e-85 319.3 225 71.1
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 6.9e-85 317.8 216 71.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 6.9e-85 317.8 229 69.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 9.1e-85 317.4 228 68.4
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 9.1e-85 317.4 228 68.4
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.2e-84 317.0 228 68.4
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.2e-84 317.0 227 69.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.5e-84 316.6 226 70.4
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 2.0e-84 316.2 223 69.5
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 2.6e-84 315.8 226 69.9
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-84 315.8 226 69.9
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.5e-84 315.1 223 70.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 7.7e-84 314.3 226 69.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.7e-83 313.2 225 65.3
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.2e-83 312.8 214 71.5
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.2e-83 312.8 219 67.6
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.9e-83 312.4 221 68.8
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.8e-83 312.0 226 69.5
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 3.8e-83 312.0 229 68.1
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.8e-83 312.0 227 68.7
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 5.0e-83 311.6 221 66.5
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.4e-82 310.1 221 67.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.4e-82 310.1 224 68.8
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.9e-82 309.7 221 68.8
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.9e-82 309.7 228 66.2
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 3.2e-82 308.9 225 68.4
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.2e-82 308.5 226 69.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.2e-82 308.5 225 67.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 9.4e-82 307.4 230 69.6
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.7e-81 305.8 221 66.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.6e-81 305.4 229 67.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 225 66.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.7e-81 305.1 232 62.5
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 6.1e-81 304.7 232 63.4
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 7.9e-81 304.3 220 66.8
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 7.9e-81 304.3 232 63.4
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.4e-80 303.5 222 65.3
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.8e-80 303.1 227 61.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.3e-80 302.8 226 66.8
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.3e-80 302.8 226 66.8
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.7e-80 301.2 228 63.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.0e-79 299.7 223 64.6
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.0e-79 299.7 247 62.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 3.3e-79 298.9 225 67.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 4.4e-79 298.5 217 66.4
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 5.7e-79 298.1 221 66.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.7e-78 296.6 223 65.0
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.8e-78 295.8 224 64.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 3.7e-78 295.4 229 63.3
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.1e-77 293.9 210 65.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.1e-77 293.9 220 66.4
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-77 291.6 221 63.3
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 9.1e-77 290.8 221 63.3
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 9.1e-77 290.8 227 64.3
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-76 290.4 221 62.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.0e-76 289.7 327 50.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 2.0e-76 289.7 220 63.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.6e-76 289.3 227 63.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 4.5e-76 288.5 221 64.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 7.7e-76 287.7 224 62.1
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 8.5e-75 284.3 358 46.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.2e-74 282.3 221 62.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 4.2e-74 282.0 227 63.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-73 280.0 220 61.8
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.7e-73 279.3 220 62.3
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.7e-73 279.3 227 59.5
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 8.0e-73 277.7 228 58.3
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.0e-72 277.3 152 91.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.3e-72 276.2 228 57.9
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 3.0e-72 275.8 222 62.2
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 8.8e-72 274.2 221 60.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 2.0e-71 273.1 308 49.7
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.6e-71 272.7 220 59.1
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.1e-69 265.8 221 58.8
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 7.0e-69 264.6 152 88.2
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 3.4e-63 245.7 152 78.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 4.4e-63 245.4 181 68.0
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.4e-61 239.6 225 53.8
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.0e-59 231.9 152 72.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.1e-53 212.6 176 61.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 2.3e-51 206.5 111 91.0
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 2.3e-51 206.5 111 91.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 2.3e-51 206.5 144 68.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 7.2e-50 201.4 124 79.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.7e-49 198.7 129 75.2
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.5e-47 193.7 193 56.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.6e-47 193.0 168 59.5
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.7e-44 183.0 225 45.3
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 4.5e-44 182.2 107 81.3
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 4.7e-41 172.2 99 81.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-37 158.7 95 80.0
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.0e-36 156.8 120 65.8
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.3e-35 153.3 119 64.7
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.9e-35 152.5 116 61.2
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.2e-33 147.5 191 40.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.6e-33 147.1 120 60.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.1e-28 130.2 106 61.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 5.1e-27 125.6 144 43.8
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.5e-26 124.0 129 54.3
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.9e-26 123.6 86 67.4
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-19 100.9 81 60.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 4.9e-14 82.4 57 68.4
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-12 77.4 60 60.0
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.7e-11 73.9 84 42.9
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 9.0e-08 61.6 47 59.6


User provided reference genes

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