Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.7e-126 456.1 236 100.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.5e-103 378.3 237 81.9
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 5.8e-103 377.9 244 84.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.4e-102 374.4 240 83.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 9.3e-101 370.5 245 80.8
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.6e-100 368.2 237 79.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.6e-100 368.2 237 79.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 5.1e-99 364.8 237 79.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 5.1e-99 364.8 237 79.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.8e-97 359.0 240 78.8
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-89 333.6 237 75.5
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.8e-88 329.7 249 74.7
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.7e-66 254.2 239 61.5
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.0e-46 191.0 248 48.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.5e-45 187.2 219 52.1
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.6e-44 182.6 240 48.8
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.7e-44 182.2 258 47.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.3e-43 179.9 246 43.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.2e-42 177.6 202 51.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-42 177.6 202 51.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 4.4e-42 175.6 199 51.8
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 4.4e-42 175.6 199 51.8
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 4.4e-42 175.6 202 48.5
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.7e-42 175.3 188 54.8
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 5.7e-42 175.3 237 46.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.7e-41 173.7 173 53.8
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.7e-41 173.7 173 53.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.7e-41 173.7 215 49.8
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.2e-41 173.3 185 51.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.8e-41 172.9 221 47.1
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.7e-41 172.6 220 49.1
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 6.3e-41 171.8 199 50.8
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.3e-41 171.8 245 44.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.4e-40 169.9 247 46.2
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.4e-40 169.9 169 54.4
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.1e-40 169.5 203 48.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 4.1e-40 169.1 231 46.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.9e-39 165.2 202 48.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 5.9e-39 165.2 192 52.1
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.0e-38 164.5 255 43.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.0e-38 164.5 189 49.2
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.0e-38 164.5 189 49.2
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.3e-38 164.1 195 48.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.7e-38 163.7 197 49.2
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.3e-38 163.3 209 47.4
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.3e-38 163.3 220 44.5
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 8.6e-38 161.4 168 52.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.1e-37 161.0 217 43.8
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.3e-37 159.5 205 49.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 3.3e-37 159.5 208 43.8
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 4.3e-37 159.1 234 43.2
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 5.6e-37 158.7 151 53.0
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-36 157.5 213 45.1
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.6e-36 157.1 229 46.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.6e-36 157.1 202 44.6
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.6e-36 157.1 196 46.9
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.6e-36 156.0 197 46.2
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 6.1e-36 155.2 211 44.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.4e-35 154.1 235 40.9
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-35 153.7 203 45.3
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.0e-35 152.9 172 47.7
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 4.0e-35 152.5 200 44.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.0e-35 152.5 211 46.9
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 5.2e-35 152.1 194 45.9
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 5.2e-35 152.1 194 45.4
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.8e-35 151.8 201 43.3
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.8e-35 151.8 187 47.1
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 8.9e-35 151.4 176 45.5
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.2e-34 151.0 155 49.7
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-34 149.8 202 46.5
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-34 149.8 202 46.5
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.4e-34 149.4 167 46.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 3.4e-34 149.4 199 42.2
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 3.4e-34 149.4 199 43.7
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 4.4e-34 149.1 168 45.8
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 7.5e-34 148.3 188 44.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 7.5e-34 148.3 159 51.6
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 9.8e-34 147.9 200 46.0
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.2e-33 146.7 170 46.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.7e-33 146.0 171 46.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.9e-33 145.6 170 47.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 6.4e-33 145.2 213 39.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 6.4e-33 145.2 206 44.2
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 8.3e-33 144.8 234 39.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.1e-32 144.4 211 42.7
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.8e-32 143.7 155 46.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.1e-32 142.5 202 41.1
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.4e-32 142.1 174 44.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 7.0e-32 141.7 211 41.2
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.2e-32 141.4 247 39.7
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 9.2e-32 141.4 159 45.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 9.2e-32 141.4 167 45.5
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.6e-31 140.6 215 39.1
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.7e-31 139.8 189 42.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.7e-31 139.8 215 38.6
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.5e-31 139.4 202 42.6
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.9e-31 138.7 247 39.7
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.9e-29 133.7 161 44.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.9e-29 133.7 183 43.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.5e-29 133.3 151 44.4
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.3e-29 132.9 230 37.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-29 132.5 183 43.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.5e-29 131.3 170 44.1
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.8e-28 129.8 171 41.5
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.0e-27 127.9 203 36.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 3.1e-27 126.3 167 38.3
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 5.2e-27 125.6 203 36.5
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.2e-26 124.4 182 43.4
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.6e-26 123.2 174 42.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.6e-26 123.2 150 46.0
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.4e-26 122.5 189 37.6
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 5.8e-26 122.1 191 38.7
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 7.5e-26 121.7 189 39.7
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.4e-25 118.6 179 38.5
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.4e-24 117.5 167 42.5
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.4e-24 116.7 158 43.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.1e-24 115.9 170 39.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.4e-24 115.5 165 37.6
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 5.4e-24 115.5 182 37.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.0e-24 115.2 178 36.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 9.2e-24 114.8 192 38.5
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 9.2e-24 114.8 167 40.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.2e-23 114.4 117 50.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.6e-23 114.0 160 40.0
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-23 113.6 258 33.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.8e-23 111.7 188 37.8
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 7.8e-23 111.7 166 39.2
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.0e-22 111.3 227 33.5
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-22 110.9 156 42.3
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-22 110.9 161 43.5
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-22 110.5 181 35.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-22 110.5 181 35.4
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.7e-22 110.5 180 35.6
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.0e-22 109.8 174 38.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 3.9e-22 109.4 154 43.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.6e-22 108.2 114 49.1
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 8.6e-22 108.2 170 38.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.1e-21 107.8 160 36.9
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.5e-21 107.5 147 41.5
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.9e-21 107.1 122 50.0
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.5e-21 106.7 114 49.1
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.3e-21 106.3 114 49.1
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.2e-20 104.4 213 35.7
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 8.1e-20 101.7 177 35.0
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 8.1e-20 101.7 156 41.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.1e-19 99.8 167 36.5
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.5e-18 97.4 170 35.9
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.4e-16 90.9 192 33.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.1e-16 89.4 190 34.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.6e-15 85.9 155 31.0
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 7.8e-15 85.1 115 44.3
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.6e-14 82.0 184 31.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.5e-13 80.9 184 31.0
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 7.3e-13 78.6 96 43.8
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 7.3e-13 78.6 65 56.9
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.6e-12 76.3 198 29.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 8.1e-12 75.1 170 30.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-10 71.2 72 54.2
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 3.4e-10 69.7 78 44.9
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.3e-09 67.8 94 37.2
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.3e-09 67.8 171 26.9
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.4e-08 64.3 110 34.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.1e-07 60.5 78 39.7
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.9e-06 56.2 77 42.9
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 8.6e-06 55.1 138 31.2


User provided reference genes

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