Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 3.7e-105 385.2 237 100.0
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 5.0e-86 321.6 238 87.8
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 2.6e-82 309.3 237 80.2
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 2.6e-82 309.3 237 80.2
AT5G57340 Arabidopsis thaliana HOM05D010683 ORTHO05D008293 5.9e-79 298.1 242 83.5
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 5.9e-79 298.1 240 80.8
Carub.0008s1785 Capsella rubella HOM05D010683 ORTHO05D008293 7.2e-77 291.2 243 81.1
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 1.2e-76 290.4 242 78.5
AL8G33310 Arabidopsis lyrata HOM05D010683 ORTHO05D008293 5.7e-74 281.6 244 81.1
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 1.2e-58 230.7 182 75.8
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 3.4e-58 229.2 182 73.6
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 3.4e-58 229.2 182 73.6
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 3.4e-58 229.2 182 73.6
BcaC03g14162 Brassica carinata HOM05D010683 ORTHO05D008293 6.6e-54 214.9 183 78.1
C02p14330 Brassica napus HOM05D010683 ORTHO05D008293 1.2e-52 210.7 183 77.0
BolC2t07559H Brassica oleracea HOM05D010683 ORTHO05D008293 1.2e-52 210.7 183 77.0
BcaB05g22338 Brassica carinata HOM05D010683 ORTHO05D008293 7.0e-48 194.9 181 74.0
Aa31LG3G13210 Aethionema arabicum HOM05D010683 ORTHO05D008293 4.1e-40 169.1 241 63.1
THA.LOC104811782 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 6.4e-25 118.6 277 46.2
THA.LOC104813513 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 4.0e-19 99.4 224 49.1
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 1.2e-15 87.8 260 31.5
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 2.1e-15 87.0 216 33.8
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 6.0e-15 85.5 260 33.1
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 1.0e-14 84.7 268 30.2
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.5e-13 80.9 240 33.8
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 7.3e-13 78.6 229 31.0
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 4.8e-12 75.9 226 31.9
A10p14790 Brassica napus HOM05D010683 ORTHO05D042218 6.2e-12 75.5 53 75.5
BraA10t43559Z Brassica rapa HOM05D010683 ORTHO05D042218 6.2e-12 75.5 53 75.5
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 8.1e-12 75.1 308 29.5
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 8.1e-12 75.1 279 28.3
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 1.4e-11 74.3 247 31.6
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 3.1e-11 73.2 260 27.7
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 3.1e-11 73.2 249 30.5
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 5.3e-11 72.4 241 30.3
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 5.3e-11 72.4 196 33.7
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 6.9e-11 72.0 229 31.4
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 9.0e-11 71.6 152 40.1
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 1.5e-10 70.9 286 29.4
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 2.6e-10 70.1 232 32.3
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 4.4e-10 69.3 202 32.2
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 9.9e-10 68.2 233 30.9
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 9.9e-10 68.2 234 31.2
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 9.9e-10 68.2 262 28.2
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.7e-09 67.4 191 33.0
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 1.7e-09 67.4 234 30.3
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 1.7e-09 67.4 107 43.0
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 2.2e-09 67.0 295 26.8
PGR142G3274 Punica granatum HOM05D007665 ORTHO05D008293 2.2e-09 67.0 248 29.4
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 2.9e-09 66.6 160 33.8
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 3.8e-09 66.2 255 26.7
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 3.8e-09 66.2 238 29.8
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 4.9e-09 65.9 255 27.1
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 4.9e-09 65.9 131 38.2
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 8.4e-09 65.1 250 30.0
Medtr4g127680 Medicago truncatula HOM05D007665 ORTHO05D008293 8.4e-09 65.1 125 41.6
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 1.1e-08 64.7 239 28.0
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 1.1e-08 64.7 238 28.6
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 1.1e-08 64.7 241 28.6
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 1.4e-08 64.3 216 29.2
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.9e-08 63.9 243 30.0
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.9e-08 63.9 187 30.5
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 2.4e-08 63.5 107 43.0
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 2.4e-08 63.5 63 54.0
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 2.4e-08 63.5 248 27.4
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 4.2e-08 62.8 60 53.3
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 5.4e-08 62.4 109 38.5
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 7.1e-08 62.0 144 36.1
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 9.3e-08 61.6 144 36.1
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 9.3e-08 61.6 115 37.4
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 1.2e-07 61.2 331 25.1
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 1.2e-07 61.2 331 25.1
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 1.2e-07 61.2 180 30.6
RcHm_v2.0_Chr4g0400841 Rosa chinensis HOM05D007665 ORTHO05D008293 1.6e-07 60.8 109 37.6
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 1.6e-07 60.8 161 32.9
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 2.1e-07 60.5 46 63.0
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 2.1e-07 60.5 46 63.0
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 2.1e-07 60.5 107 42.1
Cfa013407 Carpinus fangiana HOM05D007665 ORTHO05D008293 2.7e-07 60.1 233 27.9
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 2.7e-07 60.1 261 26.1
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 2.7e-07 60.1 279 28.0
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 4.6e-07 59.3 103 40.8
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 4.6e-07 59.3 48 56.2
Actinidia01304 Actinidia chinensis HOM05D007665 ORTHO05D008293 6.0e-07 58.9 47 61.7
Lj4g0023476 Lotus japonicus HOM05D007665 ORTHO05D008293 6.0e-07 58.9 95 45.3
FAN07G1410 Fragaria x ananassa HOM05D007665 ORTHO05D008293 7.9e-07 58.5 109 37.6
FAN17G2593 Fragaria x ananassa HOM05D007665 ORTHO05D008293 7.9e-07 58.5 109 37.6
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 1.3e-06 57.8 215 27.9
Psat0s2178g0120 Pisum sativum HOM05D007665 ORTHO05D008293 1.3e-06 57.8 115 38.3
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 2.3e-06 57.0 47 59.6
Haze_21953 Corylus avellana HOM05D007665 ORTHO05D008293 2.3e-06 57.0 113 37.2
Hma1.2p1_1303F.1_g274400 Hydrangea macrophylla HOM05D007665 ORTHO05D008293 3.0e-06 56.6 250 28.4
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 3.0e-06 56.6 190 28.9
Gohir.A08G019000 Gossypium hirsutum HOM05D007665 ORTHO05D008293 3.9e-06 56.2 157 35.0
Lalb_Chr15g0084041 Lupinus albus HOM05D007665 ORTHO05D008293 3.9e-06 56.2 103 41.7
SGA_v2.0_scaffold66G22424 Striga asiatica HOM05D050165 ORTHO05D008293 3.9e-06 56.2 47 59.6
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.1e-06 55.8 131 37.4
Gorai.004G027000 Gossypium raimondii HOM05D007665 ORTHO05D008293 8.7e-06 55.1 156 35.9
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.7e-06 55.1 130 36.2


User provided reference genes

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