Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 1.7e-134 482.6 240 100.0
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.3e-114 415.2 223 92.4
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 7.5e-114 414.1 223 91.5
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.3e-113 413.3 223 91.9
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 6.3e-113 411.0 223 91.0
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 7.0e-112 407.5 223 90.1
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 4.2e-109 398.3 224 89.7
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 4.2e-109 398.3 224 89.7
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 5.2e-107 391.3 224 87.9
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 2.6e-106 389.0 223 86.1
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 5.7e-106 387.9 223 88.3
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 9.8e-106 387.1 223 85.7
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 1.7e-105 386.3 223 87.9
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 1.7e-105 386.3 223 87.9
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 2.4e-104 382.5 223 84.8
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.8e-100 369.0 224 84.4
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 1.2e-98 363.6 228 82.0
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 4.1e-96 355.1 234 78.6
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 5.6e-93 344.7 218 79.4
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.6e-92 343.2 218 79.4
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 2.4e-88 329.3 223 74.4
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 4.1e-88 328.6 221 76.0
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 4.0e-83 312.0 196 78.6
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 2.0e-82 309.7 218 72.5
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 2.0e-82 309.7 218 72.5
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 1.1e-80 303.9 175 85.1
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 7.0e-80 301.2 219 68.5
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 1.6e-79 300.1 213 70.0
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 1.3e-78 297.0 225 65.3
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 3.0e-78 295.8 223 65.5
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 5.0e-78 295.0 229 65.9
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 5.0e-78 295.0 223 65.5
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 6.6e-78 294.7 223 65.5
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 1.1e-77 293.9 213 68.5
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 1.5e-77 293.5 213 67.1
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 3.3e-77 292.4 222 65.3
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 3.3e-77 292.4 223 66.8
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 7.3e-77 291.2 213 65.3
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.6e-76 290.0 223 63.2
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 1.6e-76 290.0 225 65.3
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 2.8e-76 289.3 225 65.3
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 3.6e-76 288.9 213 64.8
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 4.7e-76 288.5 223 64.1
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 4.7e-76 288.5 223 64.6
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 8.1e-76 287.7 213 68.1
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.4e-75 287.0 222 64.0
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 2.3e-75 286.2 223 64.6
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 3.1e-75 285.8 223 63.2
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 4.0e-75 285.4 220 63.6
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 5.2e-75 285.0 223 63.7
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 7.5e-74 281.2 218 61.0
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 1.3e-73 280.4 215 64.2
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.3e-73 280.4 229 62.9
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.7e-73 280.0 223 62.8
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 2.2e-73 279.6 223 62.3
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 2.2e-73 279.6 223 62.8
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 2.9e-73 279.3 229 63.3
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 3.7e-73 278.9 214 65.0
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 4.9e-73 278.5 223 62.3
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 8.3e-73 277.7 223 62.3
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 1.1e-72 277.3 213 63.8
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.4e-72 276.9 229 62.0
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.9e-72 276.6 223 61.0
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.4e-72 276.2 197 68.0
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 2.4e-72 276.2 223 61.4
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 4.1e-72 275.4 223 61.9
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.4e-72 275.0 213 62.4
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 9.2e-72 274.2 219 61.2
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 9.2e-72 274.2 223 64.1
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.2e-71 273.9 225 61.8
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.2e-71 273.9 213 62.0
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.2e-71 273.9 234 58.5
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.2e-71 273.9 234 58.5
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.6e-71 273.5 223 62.8
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 1.6e-71 273.5 214 62.6
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 2.1e-71 273.1 223 61.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 1.3e-70 270.4 223 61.0
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 1.3e-70 270.4 213 61.0
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.7e-70 270.0 219 59.8
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.3e-70 269.6 210 61.4
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 3.0e-70 269.2 213 60.1
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 3.9e-70 268.9 213 62.4
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 5.1e-70 268.5 213 59.6
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 8.6e-70 267.7 210 61.0
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 1.1e-69 267.3 194 65.5
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.1e-69 267.3 214 60.7
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 1.5e-69 266.9 226 61.5
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 1.5e-69 266.9 213 61.0
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 1.9e-69 266.5 223 60.1
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 2.5e-69 266.2 232 59.5
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 4.3e-69 265.4 212 59.4
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 4.3e-69 265.4 226 61.1
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 5.6e-69 265.0 213 60.6
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 7.3e-69 264.6 214 60.3
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 1.2e-68 263.8 213 62.9
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 1.2e-68 263.8 223 59.2
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 2.1e-68 263.1 215 58.6
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 6.2e-68 261.5 226 60.2
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 1.8e-67 260.0 227 59.0
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.1e-67 259.2 207 61.4
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 8.9e-67 257.7 245 53.5
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 1.5e-66 256.9 159 76.7
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 1.5e-66 256.9 213 59.2
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 4.4e-66 255.4 239 54.4
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 7.6e-66 254.6 196 63.3
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.9e-65 251.9 217 58.5
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.9e-64 250.0 217 58.1
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 3.5e-63 245.7 268 48.9
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 1.3e-62 243.8 243 50.6
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 8.6e-62 241.1 159 71.1
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.1e-61 240.7 218 55.5
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 4.3e-61 238.8 213 57.3
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.6e-60 236.9 208 56.7
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 2.1e-60 236.5 213 54.9
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 1.5e-58 230.3 159 69.8
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 7.6e-58 228.0 193 59.6
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 8.4e-57 224.6 201 58.7
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 8.4e-57 224.6 158 68.4
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 2.4e-56 223.0 196 56.6
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 7.1e-56 221.5 149 71.8
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.6e-55 220.3 218 52.3
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.1e-55 219.9 151 70.9
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 1.3e-54 217.2 168 63.1
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 8.7e-54 214.5 159 64.8
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 3.3e-53 212.6 213 50.7
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 9.6e-53 211.1 142 73.9
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 3.6e-52 209.1 207 49.3
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.1e-51 207.6 180 52.8
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 3.1e-51 206.1 223 52.0
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 8.4e-49 198.0 180 50.6
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.3e-46 190.7 234 47.4
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 3.9e-46 189.1 159 54.1
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 7.4e-45 184.9 170 55.9
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.3e-44 184.1 162 58.6
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.7e-41 173.7 195 47.7
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 4.9e-41 172.2 195 46.7
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 1.3e-38 164.1 148 53.4
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.5e-37 160.6 113 69.9
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 9.6e-37 157.9 214 49.1
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 3.1e-35 152.9 106 69.8
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 4.0e-35 152.5 118 66.1
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 2.6e-34 149.8 223 40.8
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 3.5e-31 139.4 150 46.0
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 1.1e-24 117.9 75 73.3
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 5.5e-24 115.5 120 45.8
vmacro22183 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 3.4e-18 96.3 69 65.2
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 6.5e-17 92.0 84 51.2
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 2.0e-13 80.5 50 76.0
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 5.7e-13 79.0 160 37.5
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 5.7e-13 79.0 161 30.4
BolC3t19099H Brassica oleracea HOM05D001710 ORTHO05D014486 2.9e-09 66.6 52 67.3
MCO05G124 Micromonas commoda HOM05D004822 ORTHO05D005632 9.4e-08 61.6 157 29.9
Zm00001eb161820 Zea mays HOM05D004398 ORTHO05D005268 4.7e-07 59.3 149 26.8
AL6G21990 Arabidopsis lyrata HOM05D004398 ORTHO05D005268 8.0e-07 58.5 90 35.6
Carub.0006s0980 Capsella rubella HOM05D004398 ORTHO05D005268 8.0e-07 58.5 90 35.6
CANSAT54G1009 Cannabis sativa HOM05D004398 ORTHO05D005268 1.0e-06 58.2 82 36.6
CANSAT54G1633 Cannabis sativa HOM05D004398 ORTHO05D005268 1.0e-06 58.2 82 36.6
CANSAT54G2276 Cannabis sativa HOM05D004398 ORTHO05D005268 1.0e-06 58.2 82 36.6
Lj7A716G42 Lonicera japonica HOM05D004398 ORTHO05D005268 1.0e-06 58.2 95 35.8
Lj8A616G45 Lonicera japonica HOM05D004398 ORTHO05D005268 1.0e-06 58.2 133 27.1
Sabra06G0194700 Salix brachista HOM05D004398 ORTHO05D005268 1.0e-06 58.2 149 27.5
MSTRG.25860 Avicennia marina HOM05D004398 ORTHO05D005268 1.4e-06 57.8 96 35.4
Thhalv10014874m.g Eutrema salsugineum HOM05D004398 ORTHO05D005268 1.4e-06 57.8 90 35.6
PSO017G1065 Papaver somniferum HOM05D004398 ORTHO05D005268 1.8e-06 57.4 90 37.8
PSO170G5542 Papaver somniferum HOM05D004398 ORTHO05D005268 2.3e-06 57.0 90 36.7
MSTRG.13991 Avicennia marina HOM05D004398 ORTHO05D005268 3.0e-06 56.6 79 36.7
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 3.0e-06 56.6 150 24.7
Sp6g32240 Schrenkiella parvula HOM05D004398 ORTHO05D005268 3.0e-06 56.6 90 35.6
AT5G11340 Arabidopsis thaliana HOM05D004398 ORTHO05D005268 3.9e-06 56.2 79 39.2
Rhsim07G0150800 Rhododendron simsii HOM05D004398 ORTHO05D005268 3.9e-06 56.2 79 35.4
vmacro05203 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 6.7e-06 55.5 96 34.4
Aa31LG3G15850 Aethionema arabicum HOM05D004398 ORTHO05D005268 8.8e-06 55.1 90 34.4
Aqoxy7G01991 Aquilegia oxysepala HOM05D004398 ORTHO05D005268 8.8e-06 55.1 90 36.7
Eucgr.C01806 Eucalyptus grandis HOM05D004398 ORTHO05D005268 8.8e-06 55.1 96 31.2
Nitab4.5_0000508g0250 Nicotiana tabacum HOM05D004398 ORTHO05D005268 8.8e-06 55.1 150 25.3
Sc09g0008690 Simmondsia chinensis HOM05D004398 ORTHO05D005268 8.8e-06 55.1 79 35.4
vmacro05207 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 8.8e-06 55.1 80 35.0


User provided reference genes

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