Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 2.2e-146 522.3 272 100.0
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.8e-130 468.4 275 90.5
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.6e-125 453.0 276 87.0
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 3.7e-125 451.8 274 87.6
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 8.1e-125 450.7 274 87.2
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.1e-121 440.3 274 85.8
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 5.3e-116 421.4 274 83.6
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 1.1e-108 397.1 272 76.8
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 2.4e-108 396.0 274 80.7
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 2.4e-108 396.0 274 80.7
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 2.4e-108 396.0 274 80.7
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.1e-105 387.1 275 80.7
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 7.2e-105 384.4 275 80.0
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 2.0e-102 376.3 275 77.1
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 2.0e-102 376.3 275 77.1
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 4.3e-102 375.2 281 76.5
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 9.7e-102 374.0 280 75.0
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.3e-101 373.6 272 73.2
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 4.5e-99 365.2 274 74.8
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 4.8e-93 345.1 240 80.0
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 5.9e-83 311.6 272 59.2
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 7.7e-83 311.2 272 60.3
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.4e-79 300.4 271 59.0
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 2.3e-79 299.7 272 58.8
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 9.8e-78 294.3 271 59.0
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 6.3e-77 291.6 283 56.5
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 4.1e-76 288.9 274 58.4
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 1.2e-75 287.3 274 55.8
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.7e-75 286.2 274 56.2
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 3.5e-75 285.8 274 55.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.5e-75 285.4 285 58.6
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 1.9e-73 280.0 285 54.7
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.2e-73 279.3 284 56.0
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 4.2e-73 278.9 282 54.6
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 9.4e-73 277.7 287 55.4
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 9.4e-73 277.7 287 55.4
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 1.6e-72 276.9 277 56.3
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 6.1e-72 275.0 284 53.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 1.0e-71 274.2 291 52.9
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 1.0e-71 274.2 275 54.9
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 1.4e-71 273.9 278 54.3
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.8e-71 273.5 282 55.3
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 1.8e-71 273.5 270 56.3
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 2.3e-71 273.1 282 54.6
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.0e-71 272.7 291 52.6
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 3.0e-71 272.7 288 54.5
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.2e-70 270.8 276 55.4
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.6e-70 269.6 293 52.9
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.2e-69 266.5 285 53.3
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 2.2e-69 266.5 273 55.7
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 8.3e-69 264.6 274 52.9
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.1e-68 264.2 279 53.8
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.4e-68 263.8 279 54.1
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.4e-68 263.8 303 50.8
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.4e-68 263.1 318 48.7
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 2.4e-68 263.1 273 53.8
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 4.1e-68 262.3 276 55.4
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 5.4e-68 261.9 272 54.8
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 9.2e-68 261.2 283 53.4
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.2e-67 260.8 350 46.0
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 2.0e-67 260.0 273 54.2
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 2.7e-67 259.6 268 53.4
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 4.5e-67 258.8 272 52.9
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.7e-67 258.1 288 51.4
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.0e-66 257.7 274 53.3
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 1.7e-66 256.9 279 51.6
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.3e-66 256.5 276 53.3
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 2.9e-66 256.1 275 51.6
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 3.8e-66 255.8 298 52.0
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.5e-65 253.8 281 53.7
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 3.3e-65 252.7 275 53.1
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 3.3e-65 252.7 227 59.9
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 4.3e-65 252.3 277 51.6
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 5.6e-65 251.9 276 54.0
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.3e-65 251.5 288 51.0
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 1.2e-64 250.8 277 53.8
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 2.1e-64 250.0 278 53.2
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 2.1e-64 250.0 280 51.4
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 2.1e-64 250.0 279 51.6
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 3.6e-64 249.2 284 52.5
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 6.1e-64 248.4 280 51.1
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 1.0e-63 247.7 279 51.6
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 1.4e-63 247.3 281 50.5
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 1.8e-63 246.9 278 50.7
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.6e-62 243.0 292 50.7
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 2.6e-62 243.0 285 50.5
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 5.7e-62 241.9 273 50.9
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 7.5e-62 241.5 276 50.7
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 9.8e-62 241.1 283 49.8
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 8.3e-61 238.0 323 46.7
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 1.1e-60 237.7 284 49.3
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 7.0e-60 235.0 304 48.4
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 9.2e-60 234.6 281 51.6
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.7e-59 233.0 292 48.3
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 1.7e-58 230.3 281 52.3
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 2.3e-58 229.9 285 48.4
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.9e-58 229.2 147 82.3
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 6.6e-58 228.4 285 48.1
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.5e-57 227.3 273 49.8
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 1.9e-57 226.9 271 49.8
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 4.3e-57 225.7 274 51.5
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 9.5e-57 224.6 342 42.7
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 4.7e-56 222.2 273 49.1
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 6.2e-56 221.9 289 46.4
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 3.1e-55 219.5 271 49.8
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 6.8e-55 218.4 287 47.0
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.2e-54 217.6 280 49.6
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.2e-54 217.6 283 47.0
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.4e-54 216.1 272 48.5
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.2e-53 213.4 277 44.4
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 2.9e-53 213.0 279 44.8
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.1e-52 211.1 276 47.8
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.4e-52 209.9 281 45.2
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 2.4e-52 209.9 172 65.1
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.6e-51 207.2 275 46.9
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 4.6e-51 205.7 270 46.3
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 2.6e-46 189.9 295 43.4
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.2e-45 186.8 177 54.8
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.5e-43 179.5 478 32.0
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 1.6e-40 170.6 269 43.9
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.6e-40 170.6 136 65.4
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 6.2e-40 168.7 136 64.7
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.4e-39 167.5 509 30.1
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 1.8e-39 167.2 220 45.0
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 3.4e-38 162.9 116 70.7
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 5.8e-38 162.2 282 39.4
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 9.9e-38 161.4 143 60.8
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 2.9e-37 159.8 274 38.7
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 5.4e-36 155.6 217 47.9
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.1e-31 139.8 172 47.1
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 8.9e-31 138.3 175 46.3
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 9.9e-30 134.8 176 44.3
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 1.7e-29 134.0 101 66.3
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 2.2e-29 133.7 268 37.3
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 2.2e-29 133.7 283 38.9
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 3.5e-27 126.3 273 33.7
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 1.3e-24 117.9 175 41.7
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.8e-24 116.7 271 31.7
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 1.4e-23 114.4 107 58.9
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 9.0e-23 111.7 102 59.8
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 7.6e-22 108.6 289 33.2
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.9e-20 104.0 173 43.9
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.5e-17 93.6 165 40.6
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-14 84.3 146 38.4
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-12 77.0 147 36.1
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-12 76.6 151 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.2e-11 74.7 164 34.8
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.6e-11 74.3 190 34.2
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.8e-10 70.9 153 34.0
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.0e-10 70.1 244 29.1
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 8.7e-10 68.6 99 42.4
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-09 68.2 172 30.8
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 1.9e-09 67.4 77 50.6
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 1.9e-09 67.4 77 50.6
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.3e-09 66.2 180 31.1
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 9.6e-09 65.1 149 29.5
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-08 64.7 162 31.5
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.6e-08 64.3 150 34.0
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 2.8e-08 63.5 70 47.1
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.8e-08 63.5 153 31.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.7e-08 63.2 254 28.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.7e-08 63.2 75 40.0
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.8e-08 62.8 168 32.1
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.8e-08 62.8 95 38.9
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 6.2e-08 62.4 278 23.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.1e-07 61.6 80 38.8
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 1.8e-07 60.8 85 45.9
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 2.4e-07 60.5 151 33.1
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 6.9e-07 58.9 82 40.2
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.2e-06 58.2 78 41.0
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.2e-06 58.2 107 35.5
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.6e-06 57.0 79 39.2
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 4.5e-06 56.2 240 28.8
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 5.8e-06 55.8 149 30.2
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 7.6e-06 55.5 146 31.5
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 7.6e-06 55.5 147 32.0
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 7.6e-06 55.5 166 27.1
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.0e-05 55.1 158 34.2
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.0e-05 55.1 71 42.3


User provided reference genes

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