Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 4.3e-150 534.6 274 100.0
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 6.9e-132 474.2 276 89.5
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-131 473.4 276 88.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.6e-131 472.2 276 87.7
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.0e-130 470.3 275 89.5
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.4e-126 454.9 276 85.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-123 446.8 277 85.2
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.0e-122 443.7 276 85.1
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.1e-121 440.3 276 84.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.0e-119 432.2 258 87.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 6.7e-119 431.0 279 83.2
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 4.1e-116 421.8 274 81.0
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.9e-113 412.9 276 76.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.0e-95 354.0 276 66.3
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.4e-95 353.6 276 65.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 9.8e-94 347.4 266 64.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.2e-93 346.3 276 62.7
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.4e-92 343.6 277 63.5
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.4e-92 342.8 276 62.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 7.0e-92 341.3 278 63.7
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 5.9e-91 338.2 276 63.8
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 7.8e-91 337.8 252 65.1
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.0e-90 337.4 276 62.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.3e-90 337.0 276 62.3
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 1.3e-90 337.0 278 62.9
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.3e-90 336.3 276 62.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.9e-90 335.9 253 66.0
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 2.9e-90 335.9 273 62.6
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.8e-90 335.5 278 63.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 5.0e-90 335.1 237 68.4
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 3.3e-89 332.4 276 62.0
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.3e-89 332.4 242 66.9
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.6e-89 331.6 276 62.7
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 5.6e-89 331.6 253 63.6
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 5.6e-89 331.6 276 61.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 7.3e-89 331.3 266 61.7
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.2e-88 330.5 276 61.6
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.6e-88 330.1 238 68.1
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.6e-88 330.1 241 66.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.1e-88 329.7 241 67.6
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 3.6e-88 328.9 237 67.9
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 3.6e-88 328.9 259 62.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.6e-88 328.9 244 68.0
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.6e-88 328.9 253 64.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 4.7e-88 328.6 237 67.5
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.7e-88 328.6 265 64.5
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.0e-87 327.4 276 60.9
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.4e-87 327.0 249 67.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.4e-87 327.0 249 66.7
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.4e-87 327.0 268 61.6
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.3e-87 326.2 207 77.3
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.3e-87 326.2 244 67.2
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 3.0e-87 325.9 278 61.9
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.2e-87 325.1 212 81.6
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 6.8e-87 324.7 273 61.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.8e-87 324.7 278 61.5
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.8e-87 324.7 244 67.2
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 6.8e-87 324.7 241 65.6
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 8.9e-87 324.3 276 60.5
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.2e-86 323.9 240 67.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.5e-86 323.6 222 72.1
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.5e-86 323.6 277 61.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.5e-86 323.6 261 63.2
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.6e-86 322.8 254 64.2
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.6e-86 322.8 273 61.2
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 3.4e-86 322.4 278 61.9
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.4e-86 322.4 243 65.8
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 5.7e-86 321.6 270 61.1
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.7e-86 321.6 275 62.2
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 5.7e-86 321.6 248 65.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.3e-85 320.5 279 58.4
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.3e-85 320.5 235 66.8
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 8.3e-85 317.8 248 64.9
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.4e-84 317.0 275 60.0
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.2e-84 315.8 228 68.0
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 3.2e-84 315.8 253 64.0
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 4.1e-84 315.5 234 65.8
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 4.1e-84 315.5 276 58.3
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 5.4e-84 315.1 245 63.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.2e-83 313.9 265 61.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.6e-83 313.5 260 62.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.6e-83 313.5 247 64.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.6e-83 313.5 237 66.7
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.6e-83 313.5 260 61.9
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.0e-83 313.2 237 66.7
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 3.5e-83 312.4 204 75.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.9e-83 311.6 205 73.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.9e-83 311.6 207 73.9
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.0e-82 310.8 215 71.6
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.0e-82 310.8 210 72.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 272 61.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.3e-82 309.7 204 73.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.9e-82 308.9 254 61.4
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.5e-81 307.0 220 67.7
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 3.3e-81 305.8 264 60.6
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 7.3e-81 304.7 234 63.7
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.6e-80 303.5 207 72.9
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.6e-80 303.5 250 62.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 4.7e-80 302.0 276 57.2
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 6.2e-80 301.6 266 59.4
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 8.0e-80 301.2 255 61.6
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 4.0e-79 298.9 200 81.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 4.4e-78 295.4 248 59.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.7e-75 286.2 223 60.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.5e-75 285.8 205 69.8
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.7e-74 283.5 236 60.2
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.6e-74 281.6 230 63.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-73 280.8 245 59.2
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.5e-73 280.4 230 62.6
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.5e-73 279.6 196 70.4
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.1e-72 276.6 251 56.6
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 6.2e-72 275.0 227 58.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.2e-70 270.8 247 59.9
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.9e-68 263.5 207 60.9
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 7.1e-68 261.5 214 57.9
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.9e-65 253.4 199 62.8
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.6e-65 251.9 212 61.3
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 8.4e-61 238.0 212 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.1e-57 227.6 209 52.2
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.6e-57 224.6 182 65.9
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 8.1e-56 221.5 244 45.1
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 2.9e-53 213.0 220 47.7
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.9e-52 210.3 212 49.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 7.1e-52 208.4 195 54.4
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.2e-51 207.6 169 64.5
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.2e-46 191.0 239 37.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 3.2e-44 183.0 119 70.6
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 2.3e-42 176.8 217 41.9
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.1e-39 166.4 109 75.2
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 4.9e-29 132.5 139 54.7
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.9e-28 130.6 127 58.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.7e-26 122.1 130 50.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 5.9e-22 109.0 159 39.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 5.9e-22 109.0 91 60.4
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 6.5e-21 105.5 88 63.6
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-15 88.2 58 74.1
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 2.6e-14 83.6 127 43.3
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.3e-13 81.3 246 32.5
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 1.1e-07 61.6 60 55.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.4e-07 61.2 58 56.9


User provided reference genes

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