Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.8e-143 512.7 277 100.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.3e-141 504.2 277 97.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-141 503.8 277 97.8
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-138 496.9 277 96.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-138 496.1 277 95.7
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-138 495.0 277 95.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 8.5e-138 493.8 277 95.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 8.5e-138 493.8 277 95.7
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.6e-136 489.6 277 94.6
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.6e-136 488.4 277 94.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 5.2e-135 484.6 277 93.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.0e-134 482.6 277 93.5
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 3.8e-130 468.4 277 90.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-129 465.7 277 90.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.5e-129 465.7 277 90.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-129 465.7 277 90.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.6e-128 461.8 281 89.0
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.1e-124 450.3 319 79.6
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.4e-116 422.5 279 82.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.0e-114 415.6 276 79.0
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.5e-113 413.3 277 79.1
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 78.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 4.7e-112 408.3 277 78.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 6.2e-112 407.9 274 78.8
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 6.2e-112 407.9 274 77.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 8.1e-112 407.5 277 77.6
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.1e-111 407.1 277 78.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.1e-111 407.1 276 78.3
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 78.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 77.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 2.3e-111 406.0 277 77.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.1e-111 405.6 276 77.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 5.2e-111 404.8 274 76.6
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 78.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 77.0
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 77.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 76.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 77.4
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.5e-110 403.3 274 77.7
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.0e-110 402.9 276 77.2
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.0e-110 402.9 277 75.8
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.0e-110 402.9 273 77.3
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 76.2
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 7.5e-110 401.0 277 76.5
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 7.5e-110 401.0 276 77.2
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 76.2
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 76.2
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 76.2
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 76.2
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 76.3
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 76.5
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.9e-109 399.1 277 76.2
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.7e-109 398.7 277 75.8
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 6.4e-109 397.9 277 75.8
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.9e-108 396.4 277 75.1
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 76.2
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 75.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 75.9
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 74.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 9.2e-108 394.0 274 77.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.2e-107 393.7 272 76.8
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.6e-107 393.3 274 75.9
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-107 393.3 277 74.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.5e-107 392.1 272 76.1
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.0e-106 390.6 274 75.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.7e-106 389.8 277 74.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-106 389.8 288 73.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.3e-106 389.4 275 75.6
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-106 389.4 274 73.7
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.0e-106 389.0 274 75.5
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.1e-105 387.1 273 75.1
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.3e-105 385.6 275 75.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.3e-105 385.2 275 74.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.2e-104 383.6 272 74.3
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.1e-104 382.9 275 73.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.1e-104 382.9 273 76.6
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 2.8e-104 382.5 275 74.5
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.6e-104 382.1 278 73.4
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 6.2e-104 381.3 304 69.1
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 8.1e-104 380.9 275 73.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 8.1e-104 380.9 275 73.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-103 380.6 272 74.3
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.4e-103 380.2 277 73.3
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.4e-103 380.2 276 72.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.3e-103 379.4 273 74.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.3e-103 379.4 272 74.3
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-103 379.0 255 81.6
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 4.0e-103 378.6 270 73.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.2e-103 378.3 275 73.5
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.2e-103 378.3 273 74.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 5.2e-103 378.3 272 73.9
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 8.9e-103 377.5 273 72.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.5e-102 376.7 286 72.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 3.4e-102 375.6 275 72.7
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.3e-101 373.6 281 70.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 3.7e-101 372.1 293 69.3
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.1e-100 370.5 273 74.0
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 7.1e-100 367.9 274 70.8
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-99 366.3 255 80.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.6e-99 365.2 282 73.4
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 7.8e-99 364.4 282 73.8
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-98 362.5 258 79.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 5.1e-98 361.7 259 79.5
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 277 69.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-97 360.5 291 67.0
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.5e-97 359.4 277 71.5
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-96 357.1 282 73.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 6.2e-96 354.8 282 73.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.4e-95 352.8 269 71.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.1e-95 352.4 336 61.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.0e-95 352.1 272 68.8
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 5.2e-95 351.7 282 72.7
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.8e-95 351.3 272 68.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-94 350.1 270 69.3
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.2e-93 346.3 271 67.5
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.9e-92 343.2 325 61.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.4e-92 342.8 273 68.5
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.1e-91 339.7 268 66.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 6.6e-90 334.7 367 54.5
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 5.6e-89 331.6 272 66.2
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-87 327.4 251 69.7
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 9.0e-87 324.3 226 80.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.4e-86 322.0 266 64.3
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 7.6e-86 321.2 257 66.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-83 313.9 256 71.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.2e-83 313.9 274 58.4
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-83 311.6 281 66.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 7.9e-83 311.2 275 58.2
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.7e-82 307.8 211 76.8
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 9.6e-81 304.3 269 61.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 9.0e-79 297.7 267 59.6
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.7e-77 293.5 264 59.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.4e-76 289.7 264 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.6e-75 287.0 264 57.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.7e-75 286.2 267 58.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.7e-75 286.2 486 41.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 7.9e-75 284.6 486 41.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-71 273.5 277 54.5
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.9e-71 271.6 252 63.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-68 264.2 267 60.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 7.1e-68 261.5 258 60.9
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.3e-66 256.5 265 52.8
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 5.7e-65 251.9 164 78.7
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 3.4e-62 242.7 300 53.0
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.9e-60 236.9 267 52.4
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-58 231.1 131 93.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.3e-55 218.8 140 79.3
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.0e-49 200.3 272 47.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.9e-43 178.3 131 73.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 5.2e-42 175.6 415 35.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.8e-42 174.9 136 69.9
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-41 172.9 148 65.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.2e-40 170.2 138 62.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-38 164.5 164 60.4
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 8.5e-37 158.3 216 46.8
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.5e-36 155.6 130 66.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.2e-36 155.2 96 82.3
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.7e-35 153.3 121 70.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-27 127.1 95 73.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.7e-27 125.9 143 51.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.0e-26 124.8 257 34.2
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 7.5e-25 118.6 264 31.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-24 115.2 111 62.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.1e-23 114.8 293 29.4
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.4e-23 113.6 139 48.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-21 107.1 73 79.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.2e-20 102.8 150 46.7
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-17 93.2 52 92.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 90.4
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 90.4
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-17 91.7 52 90.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.8e-17 91.7 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 9.8e-17 91.7 72 61.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 69 68.1
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.7e-16 89.7 71 64.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-16 89.4 52 88.5
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.1e-15 88.2 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.4e-15 87.8 72 59.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-15 87.4 50 88.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-15 87.0 59 76.3
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-15 87.0 68 63.2
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 5.9e-14 82.4 53 77.4
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 7.5e-09 65.5 65 55.4
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.4e-07 61.2 40 77.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-07 60.1 52 55.8


User provided reference genes

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