Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.7e-162 575.9 278 100.0
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.5e-84 316.2 287 56.4
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.4e-79 299.7 279 54.8
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.2e-76 288.9 280 53.6
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 3.0e-74 282.7 272 56.6
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-73 278.9 272 55.5
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.7e-73 278.5 258 55.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 7.4e-73 278.1 257 55.6
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.8e-72 276.2 257 53.7
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.1e-71 272.3 255 53.3
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.1e-71 272.3 257 52.9
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.7e-67 259.6 290 49.0
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 4.6e-67 258.8 263 51.7
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.3e-66 256.5 281 49.1
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.0e-66 256.1 282 48.2
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 5.1e-66 255.4 259 52.1
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-65 253.8 301 47.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-65 253.1 258 51.9
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-65 253.1 258 51.9
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 9.1e-63 244.6 273 48.4
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 9.1e-63 244.6 273 48.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 5.0e-61 238.8 258 48.8
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 7.2e-60 235.0 177 64.4
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 7.2e-60 235.0 177 64.4
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 6.1e-59 231.9 240 54.2
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 6.1e-59 231.9 240 54.2
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.1e-59 231.9 177 63.8
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-58 230.3 172 66.3
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-58 230.3 242 54.1
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 9.7e-57 224.6 233 51.5
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.1e-55 221.1 263 43.0
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-55 220.3 177 63.3
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.3e-48 197.6 334 34.4
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.3e-48 197.6 334 34.4
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.4e-47 193.4 310 38.4
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 9.1e-47 191.4 334 34.4
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 2.6e-46 189.9 157 57.3
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 3.5e-46 189.5 320 34.7
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 3.8e-45 186.0 177 53.1
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.0e-45 185.7 198 49.5
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 6.5e-45 185.3 311 35.4
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 6.5e-45 185.3 334 33.5
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 8.5e-45 184.9 300 37.3
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.5e-44 183.3 190 46.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 5.5e-44 182.2 288 36.5
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 7.2e-44 181.8 186 47.3
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.2e-43 181.0 325 34.5
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.6e-43 180.6 186 45.7
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 6.1e-43 178.7 326 34.7
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 8.0e-43 178.3 318 35.2
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.0e-43 178.3 318 34.3
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.4e-42 177.6 339 32.7
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.8e-42 177.2 186 45.2
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.8e-42 177.2 323 34.1
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.8e-42 177.2 185 45.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.3e-42 176.8 318 35.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 2.3e-42 176.8 339 33.3
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 4.0e-42 176.0 200 42.0
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 5.2e-42 175.6 198 44.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 6.8e-42 175.3 313 34.5
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 8.8e-42 174.9 171 49.7
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 8.8e-42 174.9 174 46.0
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.2e-41 174.5 188 46.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.5e-41 174.1 190 45.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.0e-41 173.7 173 46.8
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-41 173.7 175 46.9
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.4e-41 172.9 330 33.9
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 3.4e-41 172.9 341 32.0
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.4e-41 172.6 318 36.2
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 4.4e-41 172.6 195 44.6
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.4e-41 172.6 185 45.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 5.7e-41 172.2 212 41.0
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 7.5e-41 171.8 323 32.8
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 9.7e-41 171.4 342 32.5
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 9.7e-41 171.4 172 45.3
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.7e-40 170.6 305 34.4
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.7e-40 170.6 167 49.1
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.2e-40 170.2 185 45.4
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 2.8e-40 169.9 199 42.7
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.8e-40 169.9 190 44.2
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 6.3e-40 168.7 200 43.5
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 8.3e-40 168.3 190 43.7
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 8.3e-40 168.3 199 40.7
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.1e-39 167.9 194 43.8
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.4e-39 167.5 190 43.7
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.4e-39 167.5 190 44.7
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.4e-39 167.5 192 42.7
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.8e-39 167.2 202 41.1
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.1e-39 166.4 332 33.7
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 5.3e-39 165.6 302 33.4
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.3e-39 165.6 335 30.4
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 7.0e-39 165.2 186 43.0
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 7.0e-39 165.2 329 30.7
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 9.1e-39 164.9 333 34.2
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-38 164.5 311 34.4
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.2e-38 164.5 227 40.1
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.7e-38 163.3 184 44.0
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 2.7e-38 163.3 337 32.6
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.0e-37 161.4 248 42.7
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.0e-37 161.4 190 44.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.0e-37 161.4 320 31.9
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.3e-37 161.0 183 48.6
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.3e-37 161.0 183 48.6
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.7e-37 160.6 219 37.4
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 2.2e-37 160.2 188 44.1
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 2.9e-37 159.8 190 42.1
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 6.5e-37 158.7 184 41.8
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 8.5e-37 158.3 202 41.1
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-36 156.4 248 34.7
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 3.2e-36 156.4 195 43.6
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.5e-36 155.6 211 39.8
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 9.4e-36 154.8 207 40.1
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 4.7e-35 152.5 192 40.1
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.8e-34 150.6 339 27.7
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 3.0e-34 149.8 210 38.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.2e-34 149.1 409 26.7
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 6.8e-34 148.7 252 36.1
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.2e-33 147.9 209 37.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-32 144.4 173 40.5
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-32 144.4 167 43.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-32 143.7 173 41.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-32 143.7 198 42.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 3.7e-32 142.9 220 35.0
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 6.3e-32 142.1 187 38.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 8.3e-32 141.7 145 46.9
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.4e-31 141.0 188 40.4
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-31 140.6 192 37.0
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 5.4e-31 139.0 331 28.1
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 7.0e-31 138.7 332 28.6
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.9e-30 135.6 234 32.5
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 7.7e-30 135.2 190 39.5
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 7.7e-30 135.2 411 27.0
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.0e-29 132.5 180 38.9
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 8.6e-29 131.7 254 29.9
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.8e-26 124.0 148 39.9
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 8.9e-26 121.7 177 36.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 8.9e-26 121.7 268 32.1
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 3.4e-25 119.8 285 28.1
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.7e-24 116.3 264 31.4
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.7e-24 116.3 221 33.5
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 8.3e-24 115.2 168 39.9
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.4e-23 114.4 179 37.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.6e-22 110.9 182 33.0
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.0e-21 108.2 96 51.0
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 6.6e-21 105.5 307 26.7
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.3e-20 103.2 91 51.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.3e-20 103.2 99 45.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 5.6e-20 102.4 131 38.2
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.7e-19 99.4 95 47.4
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 6.8e-18 95.5 76 52.6
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.6e-17 93.6 218 32.1
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 3.4e-17 93.2 128 36.7
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 3.4e-17 93.2 181 33.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 3.4e-17 93.2 93 46.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 5.4e-15 85.9 117 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.7e-14 83.6 170 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 8.0e-11 72.0 128 32.0
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 3.1e-10 70.1 43 69.8
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.0e-10 69.7 70 50.0
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 8.9e-10 68.6 60 43.3
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 3.7e-08 63.2 49 51.0
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.7e-08 63.2 170 28.8
CAN.G1033.3 Capsicum annuum HOM05D000621 ORTHO05D000421 4.6e-06 56.2 172 28.5


User provided reference genes

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