Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 8.1e-160 567.0 281 100.0
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.2e-155 553.1 281 96.8
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 2.5e-153 545.4 281 95.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 3.3e-153 545.0 281 94.7
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.3e-153 543.9 281 94.3
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 9.5e-153 543.5 281 94.3
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-152 542.3 281 94.0
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.1e-152 542.3 282 95.7
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 4.7e-152 541.2 281 94.0
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.2e-152 540.8 283 95.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 8.1e-152 540.4 281 94.0
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-151 539.7 281 93.2
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-151 539.7 281 93.2
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.0e-150 535.8 283 94.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.1e-143 513.5 282 90.1
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.1e-143 513.5 275 92.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.6e-136 489.6 281 85.8
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.1e-135 485.3 282 84.8
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.0e-134 482.6 282 84.4
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.9e-133 478.8 283 84.1
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.9e-133 478.8 283 84.1
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 6.4e-133 477.6 282 82.6
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.4e-132 476.5 282 82.6
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 7.1e-132 474.2 284 82.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 7.1e-132 474.2 284 82.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 9.3e-132 473.8 283 83.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.2e-131 473.4 282 83.3
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.6e-131 473.0 288 81.9
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 4.6e-131 471.5 284 83.5
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.0e-130 468.8 284 83.1
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.0e-130 468.8 284 83.1
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.5e-129 466.5 283 83.4
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 6.9e-127 457.6 275 82.9
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 2.0e-118 429.5 277 76.9
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.4e-108 396.7 281 67.6
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.1e-105 387.1 285 66.0
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.9e-105 386.3 286 66.1
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 2.2e-104 382.9 283 66.4
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 2.8e-104 382.5 281 66.5
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.8e-104 382.5 283 64.7
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.7e-104 382.1 278 66.9
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 3.7e-104 382.1 278 66.2
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 6.3e-104 381.3 287 66.2
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.4e-103 380.2 285 66.0
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.8e-103 379.8 285 64.9
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.1e-103 378.6 281 63.7
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.2e-102 377.1 281 65.5
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.5e-102 376.7 282 64.5
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.0e-102 376.3 281 65.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 2.0e-102 376.3 286 67.1
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 2.6e-102 375.9 286 65.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.0e-101 374.0 277 65.3
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.3e-101 373.6 284 63.4
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.3e-101 373.6 288 63.2
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.7e-101 373.2 281 65.5
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.9e-101 372.5 282 66.3
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 5.0e-101 371.7 281 63.3
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.0e-101 371.7 283 66.1
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 5.0e-101 371.7 282 64.5
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 5.0e-101 371.7 282 63.8
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 6.5e-101 371.3 281 65.1
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 8.5e-101 370.9 281 64.1
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.1e-100 370.5 281 64.1
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 3.2e-100 369.0 285 64.2
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 5.5e-100 368.2 277 65.3
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.6e-99 365.2 282 62.1
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 6.1e-99 364.8 283 64.3
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.9e-99 364.4 284 62.7
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 7.9e-99 364.4 278 62.2
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.0e-98 364.0 285 62.1
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.0e-98 364.0 278 63.3
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.0e-98 364.0 287 61.7
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.0e-98 364.0 284 62.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.4e-98 363.6 282 62.1
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.4e-98 363.6 281 61.9
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.4e-98 363.6 282 61.7
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.8e-98 363.2 282 62.4
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.8e-98 363.2 281 63.3
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.8e-98 363.2 280 61.1
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.3e-98 362.8 285 62.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.0e-98 362.5 285 62.1
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 6.7e-98 361.3 280 60.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 6.7e-98 361.3 283 62.5
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 2.6e-97 359.4 281 61.9
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 4.4e-97 358.6 282 62.8
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 7.4e-97 357.8 278 62.6
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 9.7e-97 357.5 285 62.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 9.7e-97 357.5 279 62.0
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 9.7e-97 357.5 281 61.9
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.7e-96 356.7 283 62.9
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.7e-96 356.7 283 62.2
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.8e-96 355.9 283 62.5
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 4.8e-96 355.1 278 62.9
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 4.8e-96 355.1 283 62.5
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 6.3e-96 354.8 281 60.9
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 8.2e-96 354.4 242 68.2
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-95 353.6 242 67.8
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.4e-95 353.6 288 60.1
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.1e-95 352.4 278 62.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.1e-95 352.4 282 61.7
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.1e-95 352.1 285 61.8
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.3e-95 351.7 285 58.9
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 5.3e-95 351.7 285 58.9
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.2e-94 350.5 283 60.1
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.2e-94 350.5 282 59.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.0e-94 349.7 288 59.0
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.6e-94 349.4 284 59.2
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 4.5e-94 348.6 282 61.0
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 5.9e-94 348.2 281 61.2
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 1.0e-93 347.4 281 59.4
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.0e-93 347.4 284 61.6
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.7e-93 346.7 282 60.6
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 3.8e-93 345.5 281 60.9
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 5.0e-93 345.1 281 61.6
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 5.0e-93 345.1 281 60.5
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 6.5e-93 344.7 285 57.9
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 8.5e-93 344.4 290 59.0
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-92 343.6 283 58.7
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-92 343.6 283 58.7
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 9.4e-92 340.9 281 58.0
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.6e-91 340.1 311 55.0
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.7e-91 339.3 281 59.4
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 2.7e-91 339.3 279 58.8
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 4.7e-91 338.6 281 59.1
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 6.1e-91 338.2 284 59.5
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.6e-89 332.8 285 57.2
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 7.4e-89 331.3 281 58.4
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.2e-88 329.7 282 58.2
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.7e-88 328.9 286 57.3
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.8e-88 328.6 242 65.3
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 4.1e-87 325.5 242 62.8
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 4.1e-87 325.5 304 54.3
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 9.1e-87 324.3 282 57.4
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 3.5e-86 322.4 279 57.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.0e-85 320.9 281 58.0
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.2e-85 319.7 278 57.6
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.5e-85 317.8 281 55.9
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 4.2e-84 315.5 281 55.2
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.0e-82 310.8 284 57.4
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.2e-82 308.5 284 56.7
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 5.7e-81 305.1 282 54.6
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.7e-81 305.1 258 58.5
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 6.3e-80 301.6 283 52.7
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.7e-77 293.5 185 73.5
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 6.5e-77 291.6 230 58.7
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 3.6e-75 285.8 285 51.6
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 4.7e-75 285.4 242 56.6
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.1e-71 272.7 252 56.0
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 2.7e-70 269.6 138 92.8
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.0e-69 267.7 138 92.0
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.0e-69 267.7 138 92.0
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 6.5e-69 265.0 197 61.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 3.6e-67 259.2 246 48.8
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 6.3e-64 248.4 240 51.2
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 3.6e-59 232.6 240 45.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 3.0e-58 229.6 290 41.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 3.4e-57 226.1 186 57.5
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 8.0e-51 204.9 187 53.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.0e-46 190.3 164 54.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.3e-45 187.6 163 57.1
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.1e-44 184.5 213 43.2
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.9e-44 183.7 166 56.6
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.6e-44 182.2 184 55.4
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.6e-43 179.5 250 44.0
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 8.9e-42 174.9 113 75.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 1.7e-40 170.6 240 34.6
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-27 127.9 74 86.5
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 5.1e-21 105.9 123 41.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.1e-15 85.5 189 31.7


User provided reference genes

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