Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.2e-158 563.1 283 100.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.3e-130 469.9 283 85.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.3e-130 469.2 284 86.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.8e-128 462.2 286 84.3
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.4e-127 459.9 284 85.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.4e-127 459.9 284 85.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.4e-127 459.9 284 85.2
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-126 456.4 284 84.9
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.3e-112 410.2 284 76.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-112 410.2 276 80.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-110 403.7 285 75.8
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.7e-107 391.7 287 73.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.7e-104 383.3 291 72.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 3.7e-80 302.4 298 62.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.1e-76 290.8 293 56.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.2e-75 287.3 292 55.5
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.4e-71 273.1 278 57.2
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.2e-71 272.7 293 56.0
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 7.0e-71 271.6 292 54.1
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 6.2e-67 258.5 292 51.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.1e-67 258.1 291 51.5
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 8.1e-67 258.1 291 51.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.0e-66 255.8 291 51.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.5e-65 251.5 292 51.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.5e-65 251.5 292 51.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.9e-64 249.6 328 47.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 6.4e-64 248.4 293 49.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.1e-63 245.0 294 48.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.1e-62 243.4 266 53.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.0e-61 241.1 273 50.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.1e-61 238.8 299 50.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.6e-61 238.4 293 49.1
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.6e-61 238.0 269 52.8
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 3.3e-60 236.1 293 47.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 5.6e-60 235.3 292 47.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 9.5e-60 234.6 299 47.5
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 6.2e-59 231.9 295 47.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-58 230.7 269 51.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 8.9e-58 228.0 303 45.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-57 227.3 292 45.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.5e-57 227.3 297 46.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.6e-57 224.9 294 46.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.2e-56 223.4 269 50.9
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.1e-55 221.1 293 47.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.1e-55 219.2 295 44.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.7e-54 216.5 303 45.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 3.5e-54 216.1 213 58.2
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 4.6e-54 215.7 294 45.9
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-54 215.3 324 43.5
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-54 215.3 324 43.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.3e-53 214.2 300 45.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.0e-53 213.0 294 45.2
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.1e-53 212.2 292 45.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.9e-52 210.3 297 45.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.1e-51 206.8 295 45.4
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 6.2e-51 205.3 295 44.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.4e-50 204.1 293 44.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.4e-50 203.4 214 56.1
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.1e-50 203.0 290 44.1
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.9e-50 201.8 291 43.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.9e-50 201.8 257 47.1
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.5e-49 200.7 131 81.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.4e-49 199.1 282 45.7
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-48 196.4 269 46.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-47 194.5 294 44.2
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.4e-47 194.1 294 45.2
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 3.2e-47 193.0 301 43.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-46 189.9 241 48.1
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.7e-46 189.9 342 39.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.6e-45 185.3 390 35.9
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-44 183.7 403 35.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.3e-44 183.0 294 42.5
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.3e-44 181.8 294 42.2
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 7.3e-44 181.8 283 41.7
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.1e-43 180.3 295 39.0
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 6.2e-43 178.7 293 38.9
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 8.1e-43 178.3 251 45.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.0e-42 176.0 252 45.2
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.4e-41 172.9 298 39.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.5e-41 172.6 246 44.3
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 5.8e-41 172.2 290 40.7
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.7e-40 170.6 298 39.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.9e-40 169.9 232 46.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.4e-40 168.7 215 47.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.4e-39 167.5 294 41.2
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.4e-39 166.8 294 39.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.4e-39 166.8 287 39.0
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 3.5e-38 162.9 318 36.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 7.9e-38 161.8 256 44.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.9e-37 159.5 285 39.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 2.5e-36 156.8 247 42.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.3e-36 156.4 224 43.3
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.6e-36 154.8 285 38.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.8e-35 153.3 300 35.0
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-34 150.6 188 47.3
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 3.1e-34 149.8 293 37.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-34 149.1 238 40.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.3e-34 149.1 298 35.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.8e-33 145.6 221 42.1
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.7e-32 144.1 264 37.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.7e-32 144.1 196 49.5
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.4e-32 141.7 295 36.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.2e-31 139.8 165 49.7
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.2e-31 139.4 301 36.5
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.1e-30 137.1 311 35.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.0e-30 135.6 289 33.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.0e-29 134.8 260 38.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.0e-29 134.8 240 38.8
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.9e-28 130.6 262 36.6
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.3e-28 129.8 262 37.4
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.3e-28 129.4 329 32.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 5.6e-28 129.0 249 37.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 5.6e-28 129.0 330 32.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.2e-25 121.3 360 30.0
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.5e-25 119.4 264 33.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 5.8e-25 119.0 323 33.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.7e-24 117.5 376 28.2
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 6.5e-24 115.5 165 45.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.0e-22 109.0 231 36.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.9e-22 108.6 279 34.8
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.9e-22 108.6 227 38.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.4e-20 102.1 125 49.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 9.7e-20 101.7 284 30.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.6e-19 100.9 125 46.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.5e-17 94.4 297 29.6
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.0e-17 94.0 338 28.7
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 4.5e-17 92.8 83 68.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-16 91.3 182 35.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 6.5e-16 89.0 289 30.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.1e-15 88.2 218 34.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.1e-15 88.2 216 32.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.2e-15 86.3 218 34.4
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.0e-13 81.6 248 29.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.4e-13 81.3 227 33.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.9e-13 79.7 232 31.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.1e-13 79.3 150 36.0
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.4e-12 75.5 219 31.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 9.7e-12 75.1 84 54.8
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 8.5e-08 62.0 82 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 7.2e-07 58.9 316 28.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.6e-06 57.8 82 41.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.1e-06 55.8 81 35.8


User provided reference genes

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