Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.6e-166 588.6 287 100.0
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.5e-134 481.9 287 84.7
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 6.6e-125 451.1 289 79.9
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 8.0e-123 444.1 288 78.8
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 3.2e-119 432.2 285 75.8
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 7.8e-118 427.6 285 76.1
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.0e-117 427.2 285 76.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 7.3e-116 421.0 285 74.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 3.6e-115 418.7 287 74.6
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 4.0e-114 415.2 288 74.7
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 8.9e-114 414.1 285 75.1
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 4.9e-112 408.3 287 73.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-110 403.7 287 72.1
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 2.1e-110 402.9 283 74.2
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-109 400.2 290 73.8
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 8.6e-109 397.5 289 73.4
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.5e-108 396.7 277 73.3
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 2.4e-106 389.4 289 72.3
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 8.9e-106 387.5 289 72.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 8.9e-106 387.5 289 72.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 8.9e-106 387.5 289 72.0
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.9e-101 372.1 304 68.4
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.7e-86 322.8 289 63.3
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 6.4e-80 301.6 293 61.4
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.9e-79 300.1 296 61.5
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.3e-76 289.3 294 57.1
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.6e-75 287.0 294 59.2
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-72 276.2 291 57.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.9e-72 275.4 293 55.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-71 273.9 289 58.1
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.2e-71 272.7 296 56.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-69 267.3 289 57.1
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 3.9e-69 265.8 288 56.2
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 3.9e-69 265.8 288 56.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.3e-68 262.3 314 53.8
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 7.4e-68 261.5 285 56.8
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.8e-66 256.9 294 53.7
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 7.2e-63 245.0 291 54.0
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 7.4e-52 208.4 296 49.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-48 197.6 238 50.4
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.7e-46 189.9 276 46.7
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.6e-46 189.5 298 45.3
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 3.3e-44 183.0 301 40.2
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 3.5e-41 172.9 301 37.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 2.2e-40 170.2 322 39.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 2.2e-40 170.2 322 39.8
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.7e-38 162.5 322 40.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.4e-37 161.0 310 40.0
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.3e-37 160.2 325 39.7
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.2e-35 153.7 309 36.9
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.1e-34 151.4 314 38.2
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 7.0e-34 148.7 321 37.7
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 1.6e-33 147.5 311 36.7
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 4.5e-33 146.0 317 38.2
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 5.9e-33 145.6 304 37.5
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.3e-32 144.4 297 37.4
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-32 144.4 299 38.8
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.5e-32 142.1 317 37.2
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.5e-32 142.1 314 35.4
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.9e-31 140.6 296 35.5
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 5.5e-31 139.0 311 34.1
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 7.2e-31 138.7 294 36.4
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 7.2e-31 138.7 294 35.0
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 9.4e-31 138.3 95 70.5
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.2e-30 137.9 298 37.9
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.1e-30 137.1 318 36.8
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.1e-30 137.1 320 34.1
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 4.7e-30 136.0 307 36.5
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 8.0e-30 135.2 295 38.3
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.0e-29 134.8 297 36.4
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.4e-29 134.4 318 35.2
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-29 134.0 306 35.3
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.3e-29 133.7 318 35.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.0e-29 133.3 319 36.4
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 4.0e-29 132.9 299 36.8
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 5.2e-29 132.5 293 35.8
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.2e-29 132.5 298 33.2
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 5.2e-29 132.5 306 35.9
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.2e-29 132.5 320 34.4
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 8.8e-29 131.7 322 33.9
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 4.4e-28 129.4 311 34.4
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.7e-28 129.0 299 35.8
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 5.7e-28 129.0 293 31.4
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 5.7e-28 129.0 320 32.8
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.3e-27 127.9 308 34.1
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.7e-27 127.5 330 33.0
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.7e-27 127.5 307 33.9
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.8e-27 126.7 299 37.5
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 4.8e-27 125.9 195 45.1
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 4.8e-27 125.9 291 34.7
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 6.3e-27 125.6 305 37.7
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.3e-27 125.6 293 36.5
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 6.3e-27 125.6 291 35.4
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 6.3e-27 125.6 303 33.3
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 8.3e-27 125.2 300 36.3
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.1e-26 124.8 306 35.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-26 124.4 288 33.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.8e-26 124.0 254 39.4
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 3.1e-26 123.2 308 35.7
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.4e-26 122.5 293 34.8
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.0e-26 122.1 320 33.4
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 7.0e-26 122.1 301 34.9
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 9.1e-26 121.7 306 34.3
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 9.1e-26 121.7 314 34.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.2e-25 121.3 301 34.6
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.2e-25 121.3 297 33.7
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.6e-25 120.9 296 34.8
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.0e-25 120.6 302 33.4
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 2.0e-25 120.6 313 34.5
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 2.7e-25 120.2 297 32.7
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 2.7e-25 120.2 321 33.6
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 4.5e-25 119.4 293 34.1
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.3e-24 117.9 311 32.5
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.3e-24 117.9 314 34.4
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.3e-24 117.9 289 33.9
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.7e-24 117.5 286 35.0
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.9e-24 116.7 293 33.8
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 5.0e-24 115.9 314 34.1
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 5.0e-24 115.9 291 35.4
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 1.5e-23 114.4 328 33.2
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 2.5e-23 113.6 306 32.4
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 3.3e-23 113.2 323 31.0
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 5.5e-23 112.5 298 34.9
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.5e-23 112.5 295 33.2
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 7.2e-23 112.1 301 33.9
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 9.5e-23 111.7 306 31.0
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 9.5e-23 111.7 290 32.8
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.1e-22 110.5 304 35.2
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 8.0e-22 108.6 314 33.1
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.4e-21 107.8 192 41.1
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 5.2e-21 105.9 173 41.6
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 5.2e-21 105.9 304 33.6
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 6.8e-21 105.5 312 29.2
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 8.9e-21 105.1 314 34.1
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-20 104.4 308 32.5
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 2.0e-20 104.0 296 33.8
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.6e-20 103.6 252 35.3
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 7.5e-20 102.1 108 49.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.2e-19 100.5 184 37.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.2e-19 100.5 307 29.6
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 3.7e-19 99.8 309 34.0
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.9e-19 99.4 306 32.0
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 8.3e-19 98.6 101 58.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 8.3e-19 98.6 303 31.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.4e-18 97.8 305 32.1
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.8e-18 97.4 187 38.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 3.2e-18 96.7 295 33.2
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.7e-17 93.6 309 30.4
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 5.9e-17 92.4 302 29.8
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.0e-16 91.7 270 32.6
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.0e-16 91.7 302 29.5
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.3e-16 91.3 287 30.7
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.9e-16 90.1 283 32.2
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 2.9e-16 90.1 279 29.4
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.6e-16 89.0 128 42.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.6e-16 89.0 273 29.3
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.5e-15 87.8 295 30.2
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 5.6e-15 85.9 251 31.1
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 9.5e-15 85.1 293 28.3
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.6e-14 84.3 247 29.6
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 1.6e-14 84.3 98 50.0
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.1e-14 84.0 276 31.2
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 3.6e-14 83.2 254 31.1
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 6.1e-14 82.4 236 30.9
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 8.0e-14 82.0 93 50.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.8e-13 80.9 95 46.3
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.1e-13 80.1 297 26.9
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.9e-13 78.6 206 30.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.2e-12 78.2 119 44.5
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 5.8e-12 75.9 301 28.9
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 7.5e-12 75.5 297 26.6
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 9.8e-12 75.1 103 40.8
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.2e-11 73.9 169 30.8
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-10 71.6 156 34.0
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.1e-10 71.6 112 42.0
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.4e-10 71.2 254 32.7
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-10 70.9 288 25.7
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.4e-10 70.5 69 52.2
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 7.0e-10 68.9 283 28.3
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.3e-08 64.7 148 35.1
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 8.6e-08 62.0 141 32.6


User provided reference genes

Program Settings