Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-161 573.2 299 100.0
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.2e-116 423.7 299 79.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.2e-102 374.8 302 73.8
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 6.5e-99 364.8 300 71.7
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.9e-96 355.5 301 69.8
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 9.4e-90 334.3 306 66.0
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 5.1e-88 328.6 288 68.8
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 3.4e-84 315.8 297 66.0
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-82 310.5 296 63.9
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.5e-82 309.7 296 63.9
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.5e-82 309.7 296 63.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.3e-61 238.8 327 49.5
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.2e-58 228.4 331 49.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 8.9e-40 168.3 316 43.0
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.2e-39 167.9 319 44.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.4e-39 166.0 314 43.3
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.2e-38 163.7 306 43.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.9e-38 163.3 312 43.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.4e-37 161.0 306 43.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.4e-37 161.0 326 42.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.2e-36 157.9 311 41.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-36 157.5 344 41.3
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.7e-36 156.8 323 40.6
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.5e-36 156.4 232 49.1
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.5e-36 156.4 306 42.2
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 4.6e-36 156.0 326 41.1
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 6.0e-36 155.6 245 45.7
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 7.8e-36 155.2 325 39.4
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.0e-35 153.3 310 40.0
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.0e-35 153.3 317 43.5
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.9e-35 152.9 333 39.9
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.5e-34 151.0 315 41.6
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.3e-34 149.4 297 41.1
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 7.3e-34 148.7 296 43.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.1e-33 147.1 317 40.1
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 2.1e-33 147.1 315 40.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.6e-33 146.4 332 39.2
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.6e-33 146.4 297 41.1
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-32 144.8 329 39.2
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.4e-32 144.4 325 40.3
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.8e-32 144.1 346 39.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 6.8e-32 142.1 304 42.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.2e-31 141.4 318 41.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.5e-31 141.0 318 40.3
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.5e-31 141.0 269 40.5
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-31 141.0 313 39.6
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.0e-31 140.6 311 39.5
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.6e-31 140.2 227 45.4
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.6e-31 140.2 335 37.6
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.6e-31 140.2 335 37.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.4e-31 139.8 330 38.5
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.4e-31 139.4 318 39.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 9.8e-31 138.3 313 40.9
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.7e-30 137.5 320 36.2
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.2e-30 137.1 335 37.0
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-30 137.1 226 44.7
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-30 137.1 226 44.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-30 137.1 226 44.7
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-30 137.1 226 44.7
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.9e-30 136.7 319 40.8
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-30 136.0 226 44.7
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-30 136.0 226 44.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-30 136.0 226 44.7
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 8.3e-30 135.2 301 38.9
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.2e-29 133.3 232 44.0
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 5.4e-29 132.5 301 39.2
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 5.4e-29 132.5 299 39.1
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 7.0e-29 132.1 312 36.9
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.6e-28 131.0 290 38.6
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.6e-28 131.0 333 36.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.6e-28 131.0 322 38.5
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.5e-28 129.8 213 43.7
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.5e-28 129.8 298 39.3
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.3e-27 127.9 342 33.6
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 2.3e-27 127.1 296 39.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-27 126.7 315 40.6
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.0e-27 126.7 308 40.6
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 6.6e-27 125.6 305 39.0
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.6e-27 125.2 175 49.1
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.9e-26 124.0 305 38.7
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.9e-26 124.0 326 39.3
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.6e-26 122.5 305 38.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 5.6e-26 122.5 294 35.7
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 9.5e-26 121.7 331 35.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.6e-25 120.9 306 38.2
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 2.8e-25 120.2 308 38.6
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 6.2e-25 119.0 332 33.7
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 6.2e-25 119.0 308 38.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 8.1e-25 118.6 202 43.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 5.2e-24 115.9 300 36.0
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 5.2e-24 115.9 335 35.8
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-24 115.9 200 43.5
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 6.8e-24 115.5 320 37.8
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.9e-24 115.2 311 36.7
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 8.9e-24 115.2 293 38.6
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.0e-23 114.0 303 35.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.0e-23 114.0 308 36.4
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.6e-23 113.6 253 36.4
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 3.4e-23 113.2 127 55.1
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 4.4e-23 112.8 299 35.5
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-23 112.8 202 43.1
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 4.4e-23 112.8 299 35.8
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 5.8e-23 112.5 309 39.2
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 5.8e-23 112.5 296 37.8
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 7.5e-23 112.1 296 34.5
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.7e-22 110.9 296 38.9
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.7e-22 110.9 330 35.2
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 2.2e-22 110.5 296 37.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.1e-21 108.2 294 35.4
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 9.2e-21 105.1 298 36.6
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 9.2e-21 105.1 298 36.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.6e-20 104.4 307 35.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.1e-20 104.0 232 40.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.7e-20 103.6 289 35.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 3.5e-20 103.2 305 33.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.3e-19 101.3 299 35.8
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.3e-19 100.5 197 41.6
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.0e-19 100.1 279 34.1
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 3.0e-19 100.1 361 32.4
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 5.1e-19 99.4 299 38.8
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-18 97.8 246 37.4
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 3.3e-18 96.7 294 35.7
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.3e-18 96.7 288 33.3
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.3e-18 96.3 287 32.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 7.3e-18 95.5 82 68.3
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 7.3e-18 95.5 291 35.7
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.8e-17 93.6 285 36.8
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.8e-17 93.6 284 33.5
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.4e-16 91.3 324 32.1
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.1e-16 90.1 351 31.9
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.0e-16 89.7 302 32.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 6.8e-16 89.0 294 35.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.0e-15 87.4 194 42.3
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 2.0e-15 87.4 224 35.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.6e-15 87.0 310 32.9
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 5.8e-15 85.9 295 32.5
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 9.9e-15 85.1 209 37.3
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.2e-14 84.0 75 60.0
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 4.9e-14 82.8 279 34.4
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.1e-13 81.6 82 59.8
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.9e-13 80.9 394 31.5
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 4.2e-13 79.7 307 34.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.0e-12 75.9 78 56.4
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.1e-11 72.8 224 33.9
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 6.6e-11 72.4 220 31.4
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 2.5e-10 70.5 294 29.3
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.4e-08 64.7 281 29.9
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.0e-08 63.2 123 36.6
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.3e-08 62.8 223 30.5
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 7.6e-07 58.9 250 30.0
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 7.6e-07 58.9 242 30.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.3e-06 58.2 283 29.3
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 3.8e-06 56.6 245 31.0
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 8.4e-06 55.5 167 35.3


User provided reference genes

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