Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 1.0e-115 420.6 304 100.0
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.2e-89 334.0 309 79.3
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 7.1e-85 318.2 306 72.2
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 7.1e-85 318.2 306 72.2
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.3e-80 303.1 305 74.4
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 2.6e-79 299.7 305 75.1
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.3e-78 297.4 305 73.8
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 2.2e-78 296.6 305 70.2
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 8.3e-78 294.7 316 72.5
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.1e-77 294.3 305 69.8
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.7e-75 287.0 318 79.2
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 2.3e-75 286.6 255 69.0
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.3e-75 286.6 255 69.0
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 2.8e-73 279.6 300 68.7
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 6.2e-73 278.5 300 63.7
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.4e-72 277.3 293 73.7
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.8e-72 276.9 293 74.4
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 6.8e-72 275.0 253 73.5
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 6.0e-68 261.9 256 69.9
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.0e-67 261.2 256 69.9
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.0e-67 261.2 256 69.9
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.3e-59 233.4 312 56.4
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-55 221.1 237 65.0
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 1.7e-46 190.7 355 56.6
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.8e-35 154.1 244 45.5
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.3e-30 137.9 323 35.0
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 6.5e-30 135.6 374 34.5
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.1e-28 130.6 393 31.6
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 3.7e-25 119.8 395 31.4
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 4.8e-25 119.4 404 33.4
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 8.2e-25 118.6 342 30.7
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.1e-24 118.2 325 34.8
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.4e-24 117.9 403 30.8
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.4e-24 117.9 409 30.1
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 6.9e-24 115.5 391 30.4
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-23 114.8 405 32.8
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 2.0e-23 114.0 330 37.6
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.6e-23 113.6 343 32.4
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 5.9e-23 112.5 367 30.8
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 7.7e-23 112.1 422 33.6
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 7.7e-23 112.1 406 30.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.0e-22 111.7 399 31.1
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.0e-22 111.7 415 35.9
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.0e-22 111.7 338 36.1
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.3e-22 111.3 367 30.5
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.7e-22 110.9 402 33.1
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.7e-22 110.9 366 30.6
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.7e-22 110.9 384 30.7
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.9e-22 110.2 411 29.7
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 5.0e-22 109.4 386 28.8
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 8.5e-22 108.6 404 29.0
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 8.5e-22 108.6 403 28.5
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 8.5e-22 108.6 344 31.7
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.1e-21 108.2 300 32.7
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.9e-21 107.5 389 29.8
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 4.2e-21 106.3 377 34.0
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 5.5e-21 105.9 365 30.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 7.2e-21 105.5 391 30.9
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 2.1e-20 104.0 399 32.8
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.7e-20 103.6 418 29.4
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.6e-20 103.2 344 37.2
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 6.1e-20 102.4 442 27.6
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 7.9e-20 102.1 333 33.9
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.0e-19 101.7 337 30.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.3e-19 100.5 411 32.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.0e-19 100.1 409 29.8
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.0e-19 100.1 409 35.9
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 5.1e-19 99.4 316 38.0
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 8.8e-19 98.6 293 32.4
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 8.8e-19 98.6 275 36.4
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 8.8e-19 98.6 306 31.4
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 8.8e-19 98.6 320 41.2
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.1e-18 98.2 409 29.8
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.0e-18 97.4 322 34.8
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.6e-18 97.1 391 32.2
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.3e-18 96.7 387 30.5
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.3e-17 94.7 392 34.2
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.3e-17 94.7 335 28.7
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 2.8e-17 93.6 314 35.0
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 3.7e-17 93.2 361 29.1
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 6.3e-17 92.4 390 31.0
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.8e-16 90.9 350 28.6
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 2.4e-16 90.5 316 42.4
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 4.1e-16 89.7 331 28.7
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 7.0e-16 89.0 328 29.3
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 7.0e-16 89.0 373 36.5
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.2e-15 88.2 187 45.5
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 2.6e-15 87.0 337 28.2
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.5e-15 86.7 93 60.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 5.9e-15 85.9 46 97.8
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.0e-14 85.1 226 33.6
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.3e-14 84.7 394 31.2
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.2e-14 84.0 362 31.8
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 2.9e-14 83.6 388 34.0
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 3.8e-14 83.2 371 45.8
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 8.5e-14 82.0 89 56.2
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.1e-13 81.6 107 57.9
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.5e-13 81.3 109 49.5
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.5e-13 81.3 402 27.4
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 1.5e-13 81.3 102 51.0
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.9e-13 80.9 346 28.3
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.9e-13 80.9 92 53.3
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.9e-13 80.9 100 51.0
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 4.2e-13 79.7 114 65.8
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.2e-13 79.0 343 32.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 9.4e-13 78.6 44 90.9
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.2e-12 78.2 106 49.1
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.6e-12 77.8 405 39.0
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.6e-12 77.8 43 93.0
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.1e-12 77.4 285 35.1
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.1e-12 77.4 284 28.2
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.7e-12 77.0 119 42.9
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 3.6e-12 76.6 43 90.7
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 8.0e-12 75.5 109 47.7
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 4.0e-11 73.2 111 46.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.0e-11 73.2 131 43.5
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.0e-10 70.9 287 28.6
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.6e-10 70.5 200 37.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 4.4e-10 69.7 156 36.5
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.7e-10 69.3 92 51.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 3.7e-09 66.6 128 51.6
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.3e-09 65.9 196 32.1
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.1e-08 65.1 257 33.1
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 3.1e-08 63.5 192 30.2
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 5.3e-08 62.8 246 27.6
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 7.0e-08 62.4 42 83.3
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.9e-07 59.3 42 73.8
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 2.9e-06 57.0 287 26.1
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 5.0e-06 56.2 265 26.4
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 8.5e-06 55.5 256 38.7
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 8.5e-06 55.5 40 67.5
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 8.5e-06 55.5 42 71.4


User provided reference genes

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