Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014187m.g Eutrema salsugineum HOM05D001917 ORTHO05D010068 1.7e-155 552.7 308 100.0
Sp6g37990 Schrenkiella parvula HOM05D001917 ORTHO05D010068 3.0e-139 498.8 309 86.1
AL6G14500 Arabidopsis lyrata HOM05D001917 ORTHO05D010068 1.5e-135 486.5 308 83.8
CARHR208440 Cardamine hirsuta HOM05D001917 ORTHO05D010068 4.4e-127 458.4 309 81.2
Carub.0006s0372 Capsella rubella HOM05D001917 ORTHO05D010068 2.4e-120 436.0 312 82.4
Aa31LG11G5870 Aethionema arabicum HOM05D001917 ORTHO05D010068 5.8e-119 431.4 317 75.4
C09p72040 Brassica napus HOM05D001917 ORTHO05D010068 5.6e-114 414.8 313 77.6
BolC9t59949H Brassica oleracea HOM05D001917 ORTHO05D010068 5.6e-114 414.8 314 77.4
BraA10t45183Z Brassica rapa HOM05D001917 ORTHO05D010068 1.0e-107 394.0 314 74.8
A10p31370 Brassica napus HOM05D001917 ORTHO05D010068 3.0e-107 392.5 314 74.5
AT5G04840 Arabidopsis thaliana HOM05D001917 ORTHO05D010068 1.6e-105 386.7 248 81.5
BcaC06g32191 Brassica carinata HOM05D001917 ORTHO05D010068 1.3e-102 377.1 313 72.5
THA.LOC104816474 Tarenaya hassleriana HOM05D001917 ORTHO05D010068 7.4e-90 334.7 314 67.5
GSVIVG01034617001 Vitis vinifera HOM05D001917 ORTHO05D010068 1.5e-50 204.1 317 42.3
Potri.008G018400 Populus trichocarpa HOM05D001917 ORTHO05D010068 1.2e-47 194.5 316 44.3
Atru.chr12.1073 Acer truncatum HOM05D001917 ORTHO05D010068 2.9e-46 189.9 319 43.9
Ciclev10016047m.g Citrus clementina HOM05D001917 ORTHO05D010068 1.5e-45 187.6 317 43.2
CiPaw.13G043900 Carya illinoinensis HOM05D001917 ORTHO05D010068 2.7e-44 183.3 317 40.4
Dinv08583 Davidia involucrata HOM05D001917 ORTHO05D010068 1.4e-43 181.0 316 41.1
Prupe.2G072200 Prunus persica HOM05D001917 ORTHO05D010068 7.5e-42 175.3 312 40.4
QL04p047945 Quercus lobata HOM05D001917 ORTHO05D010068 6.3e-41 172.2 304 41.4
Sopen11g002380 Solanum pennellii HOM05D001917 ORTHO05D010068 5.4e-40 169.1 317 38.8
Hund22265 Selenicereus undatus HOM05D001917 ORTHO05D010068 9.1e-40 168.3 315 38.4
Migut.F00844 Erythranthe guttata HOM05D001917 ORTHO05D010068 1.6e-39 167.5 322 40.1
PGSC0003DMG400001999 Solanum tuberosum HOM05D001917 ORTHO05D010068 2.0e-39 167.2 317 38.8
AUR62034488 Chenopodium quinoa HOM05D001917 ORTHO05D010068 2.7e-39 166.8 315 39.4
Solyc11g006490.2 Solanum lycopersicum HOM05D001917 ORTHO05D010068 2.7e-39 166.8 317 38.2
CANSAT56G3891 Cannabis sativa HOM05D001917 ORTHO05D010068 3.5e-39 166.4 319 40.8
Hma1.2p1_0926F.1_g237550 Hydrangea macrophylla HOM05D001917 ORTHO05D010068 1.3e-38 164.5 310 39.0
Potri.010G242800 Populus trichocarpa HOM05D001917 ORTHO05D010068 5.0e-38 162.5 316 41.8
PGR044G0163 Punica granatum HOM05D001917 ORTHO05D010068 1.5e-37 161.0 314 39.8
Eucgr.J00290 Eucalyptus grandis HOM05D001917 ORTHO05D010068 1.9e-37 160.6 325 37.8
Oeu009250.1 Olea europaea HOM05D001917 ORTHO05D010068 2.5e-37 160.2 319 39.8
AUR62034166 Chenopodium quinoa HOM05D001917 ORTHO05D010068 3.3e-37 159.8 313 39.3
Sed0005533 Sechium edule HOM05D001917 ORTHO05D010068 3.3e-37 159.8 275 40.0
Actinidia34061 Actinidia chinensis HOM05D001917 ORTHO05D010068 7.2e-37 158.7 269 41.6
Sabra10G0189800 Salix brachista HOM05D001917 ORTHO05D010068 1.6e-36 157.5 317 42.0
Rhsim03G0096000 Rhododendron simsii HOM05D001917 ORTHO05D010068 8.0e-36 155.2 334 37.7
Peaxi162Scf00120g01525 Petunia axillaris HOM05D001917 ORTHO05D010068 6.8e-35 152.1 319 36.4
CsaV3_5G035190 Cucumis sativus L. HOM05D001917 ORTHO05D010068 1.2e-34 151.4 287 39.4
MELO3C012332.2 Cucumis melo HOM05D001917 ORTHO05D010068 2.0e-34 150.6 287 38.3
TAR636G1510 Trochodendron aralioides HOM05D001917 ORTHO05D010068 3.4e-34 149.8 318 38.4
Cc02_g09360 Coffea canephora HOM05D001917 ORTHO05D010068 7.5e-34 148.7 317 36.9
ClCG05G021960 Citrullus lanatus HOM05D001917 ORTHO05D010068 1.3e-33 147.9 287 38.7
Nitab4.5_0009933g0010 Nicotiana tabacum HOM05D001917 ORTHO05D010068 4.9e-33 146.0 230 43.9
Sabra08G0012000 Salix brachista HOM05D001917 ORTHO05D010068 4.9e-33 146.0 333 43.2
Oeu033274.1 Olea europaea HOM05D001917 ORTHO05D010068 6.3e-33 145.6 323 37.5
MSTRG.9031 Avicennia marina HOM05D001917 ORTHO05D010068 1.4e-32 144.4 287 39.4
CSS0002594 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D010068 1.8e-32 144.1 230 44.8
Sc09g0005080 Simmondsia chinensis HOM05D001917 ORTHO05D010068 3.1e-32 143.3 316 35.8
CAN.G143.42 Capsicum annuum HOM05D001917 ORTHO05D010068 1.6e-31 141.0 228 43.0
Cfa010522 Carpinus fangiana HOM05D001917 ORTHO05D010068 8.6e-30 135.2 227 43.6
Hund06808 Selenicereus undatus HOM05D001917 ORTHO05D010068 3.6e-28 129.8 275 34.5
Cpa.g.sc33.133 Carica papaya HOM05D001917 ORTHO05D010068 1.8e-27 127.5 217 38.2
Nn6g34689 Nelumbo nucifera HOM05D001917 ORTHO05D010068 2.3e-27 127.1 316 33.5
ECA238G0804 Erigeron canadensis HOM05D001917 ORTHO05D010068 5.2e-27 125.9 353 32.3
Os02g0538900 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D010068 6.8e-27 125.6 331 34.1
Ah.04g162550 Amaranthus hybridus HOM05D001917 ORTHO05D010068 8.9e-27 125.2 227 40.1
SalBow3G3254 Salvia bowleyana HOM05D001917 ORTHO05D010068 2.0e-26 124.0 307 33.6
Nitab4.5_0001781g0130 Nicotiana tabacum HOM05D001917 ORTHO05D010068 1.3e-25 121.3 230 39.6
Zm00001eb243050 Zea mays HOM05D001917 ORTHO05D010068 1.7e-25 120.9 327 32.4
HanXRQChr02g0053591 Helianthus annuus HOM05D001917 ORTHO05D010068 6.4e-25 119.0 268 34.0
Haze_03462 Corylus avellana HOM05D001917 ORTHO05D010068 8.3e-25 118.6 328 33.5
vmacro07272 Vaccinium macrocarpon HOM05D001917 ORTHO05D010068 8.3e-25 118.6 270 36.3
Zm00001eb181550 Zea mays HOM05D001917 ORTHO05D010068 4.1e-24 116.3 329 33.1
Lsat_1_v5_gn_2_105921 Lactuca sativa HOM05D001917 ORTHO05D010068 7.8e-23 112.1 309 32.7
ATR0772G184 Amborella trichopoda HOM05D001917 ORTHO05D010068 5.0e-22 109.4 355 28.7
HPP92_013376 Vanilla planifolia HOM05D001917 ORTHO05D010068 3.3e-21 106.7 322 30.7
Thecc.10G117300 Theobroma cacao HOM05D001917 ORTHO05D010068 6.2e-20 102.4 286 33.9
CDE06G0681 Ceratophyllum demersum HOM05D001917 ORTHO05D010068 4.4e-18 96.3 344 32.0
CSS0044781 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D010068 3.7e-17 93.2 177 39.0
Lj2A35T44 Lonicera japonica HOM05D001917 ORTHO05D010068 1.1e-16 91.7 249 32.5
CDE08G1625 Ceratophyllum demersum HOM05D001917 ORTHO05D010068 2.7e-15 87.0 248 33.9
Dinv08577 Davidia involucrata HOM05D001917 ORTHO05D010068 2.3e-14 84.0 108 47.2
Haze_09367 Corylus avellana HOM05D002172 ORTHO05D002167 2.2e-09 67.4 242 30.6
Oeu049833.1 Olea europaea HOM05D001917 ORTHO05D002790 2.2e-09 67.4 311 28.0
Oeu049834.1 Olea europaea HOM05D001917 ORTHO05D002790 2.9e-09 67.0 311 28.0
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 8.3e-09 65.5 316 27.8
Migut.N00836 Erythranthe guttata HOM05D001917 ORTHO05D002790 8.3e-09 65.5 278 27.0
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 4.1e-08 63.2 293 27.0
Cfa019613 Carpinus fangiana HOM05D002172 ORTHO05D002167 5.4e-08 62.8 243 29.6
Rhsim03G0095000 Rhododendron simsii HOM05D001917 ORTHO05D010068 5.4e-08 62.8 121 38.8
DCAR_006686 Daucus carota HOM05D001917 ORTHO05D002790 1.2e-07 61.6 356 25.3
PGR042G1770 Punica granatum HOM05D001917 ORTHO05D002790 1.2e-07 61.6 259 27.0
CDE08G1081 Ceratophyllum demersum HOM05D001917 ORTHO05D002790 1.6e-07 61.2 320 29.1
PSO170G4920 Papaver somniferum HOM05D001917 ORTHO05D002790 2.1e-07 60.8 315 25.1
SalBow8G3145 Salvia bowleyana HOM05D002172 ORTHO05D002167 2.1e-07 60.8 172 34.9
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 2.7e-07 60.5 279 28.0
ClCG11G013420 Citrullus lanatus HOM05D001917 ORTHO05D002790 3.5e-07 60.1 261 26.8
Eucgr.F03286 Eucalyptus grandis HOM05D002172 ORTHO05D002167 3.5e-07 60.1 198 32.3
Glyma.05G168100 Glycine max HOM05D001917 ORTHO05D002790 3.5e-07 60.1 263 29.3
Gohir.A01G059300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 3.5e-07 60.1 249 29.7
PSO675G6960 Papaver somniferum HOM05D002172 ORTHO05D002167 3.5e-07 60.1 202 33.7
PSO782G0466 Papaver somniferum HOM05D001917 ORTHO05D002790 3.5e-07 60.1 315 25.1
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 4.6e-07 59.7 318 28.3
Migut.B00807 Erythranthe guttata HOM05D001917 ORTHO05D002790 4.6e-07 59.7 248 28.6
Gohir.D01G045300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 4.6e-07 59.7 249 29.7
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 6.0e-07 59.3 305 26.6
Gorai.002G064900 Gossypium raimondii HOM05D002172 ORTHO05D002167 6.0e-07 59.3 249 29.7
PSO541G5259 Papaver somniferum HOM05D002172 ORTHO05D002167 6.0e-07 59.3 202 33.7
SalBow8G2046 Salvia bowleyana HOM05D002172 ORTHO05D002167 6.0e-07 59.3 172 34.9
Sed0000104 Sechium edule HOM05D001917 ORTHO05D002790 6.0e-07 59.3 266 28.2
Gorai.005G241600 Gossypium raimondii HOM05D001917 ORTHO05D002790 7.8e-07 58.9 303 26.7
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 7.8e-07 58.9 306 23.2
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 7.8e-07 58.9 289 29.4
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.0e-06 58.5 226 28.3
Glyma.08G126500 Glycine max HOM05D001917 ORTHO05D002790 1.0e-06 58.5 263 28.1
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 1.0e-06 58.5 311 26.7
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 1.0e-06 58.5 307 27.7
Actinidia26159 Actinidia chinensis HOM05D001917 ORTHO05D002790 1.3e-06 58.2 254 29.1
ATR0661G486 Amborella trichopoda HOM05D001917 ORTHO05D002790 1.3e-06 58.2 325 25.5
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.3e-06 58.2 227 29.1
Lalb_Chr25g0286131 Lupinus albus HOM05D002172 ORTHO05D002167 1.3e-06 58.2 232 30.2
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 1.3e-06 58.2 305 26.9
Oeu023417.1 Olea europaea HOM05D001917 ORTHO05D002790 1.3e-06 58.2 262 27.5
CAN.G544.4 Capsicum annuum HOM05D001917 ORTHO05D002790 1.7e-06 57.8 237 25.7
Dinv20223 Davidia involucrata HOM05D002172 ORTHO05D002167 1.7e-06 57.8 191 30.4
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 1.7e-06 57.8 308 26.9
THA.LOC104816456 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 1.7e-06 57.8 280 25.4
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 2.3e-06 57.4 314 26.1
Carub.0002s0651 Capsella rubella HOM05D001917 ORTHO05D002790 2.3e-06 57.4 299 26.8
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.3e-06 57.4 302 26.5
MBI04_g14398_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 2.3e-06 57.4 367 25.6
Sopen11g011090 Solanum pennellii HOM05D001917 ORTHO05D002790 2.3e-06 57.4 265 25.3
Lalb_Chr20g0109421 Lupinus albus HOM05D002172 ORTHO05D002167 3.0e-06 57.0 185 32.4
Nn3g18937 Nelumbo nucifera HOM05D001917 ORTHO05D002790 3.0e-06 57.0 264 28.4
Solyc11g020950.3 Solanum lycopersicum HOM05D001917 ORTHO05D002790 3.0e-06 57.0 265 25.3
Ca_17835_v3 Cicer arietinum L. HOM05D001917 ORTHO05D002790 3.9e-06 56.6 268 27.6
Lalb_Chr13g0295631 Lupinus albus HOM05D001917 ORTHO05D002790 3.9e-06 56.6 261 28.7
PGSC0003DMG400009283 Solanum tuberosum HOM05D001917 ORTHO05D002790 3.9e-06 56.6 266 24.1
MELO3C011839.2 Cucumis melo HOM05D001917 ORTHO05D002790 5.1e-06 56.2 258 27.9
CsaV3_3G019270 Cucumis sativus L. HOM05D001917 ORTHO05D002790 5.1e-06 56.2 264 29.2
Lalb_Chr12g0204531 Lupinus albus HOM05D001917 ORTHO05D002790 5.1e-06 56.2 258 29.1
Nitab4.5_0004437g0030 Nicotiana tabacum HOM05D001917 ORTHO05D002790 5.1e-06 56.2 231 25.1
HanXRQChr06g0181281 Helianthus annuus HOM05D001917 ORTHO05D002790 6.6e-06 55.8 298 24.2
HanXRQChr17g0560471 Helianthus annuus HOM05D002172 ORTHO05D002167 6.6e-06 55.8 194 30.4
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 6.6e-06 55.8 310 25.8
Gohir.A03G192700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 8.6e-06 55.5 260 28.8
Medtr8g088650 Medicago truncatula HOM05D001917 ORTHO05D002790 8.6e-06 55.5 264 28.0
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.6e-06 55.5 211 29.9


User provided reference genes

Program Settings