Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.5e-181 639.4 319 100.0
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.7e-167 592.0 319 91.8
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.5e-165 585.5 319 90.9
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 3.2e-165 585.1 315 93.3
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.4e-162 575.1 320 89.4
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 9.8e-162 573.5 321 90.3
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 4.8e-161 571.2 321 90.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 8.3e-161 570.5 321 90.0
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.4e-160 568.9 321 89.7
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 9.1e-160 567.0 328 88.1
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 2.5e-157 558.9 317 88.6
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.5e-154 549.7 322 85.7
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.2e-146 523.5 320 81.9
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 8.0e-140 500.7 317 77.9
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-136 489.6 319 75.2
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 4.6e-135 485.0 319 75.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.3e-134 482.6 317 79.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 6.6e-134 481.1 319 74.6
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 8.6e-134 480.7 319 73.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 3.3e-133 478.8 319 74.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 3.3e-133 478.8 319 75.2
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 3.6e-132 475.3 318 73.6
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 8.1e-132 474.2 319 75.9
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.1e-131 473.8 319 74.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.4e-131 473.4 322 73.9
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.3e-131 472.6 317 74.1
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 5.2e-131 471.5 319 73.7
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.7e-129 466.5 317 73.8
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.7e-129 466.5 314 74.2
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 2.2e-129 466.1 317 72.6
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 2.2e-129 466.1 320 73.4
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.9e-129 465.7 319 74.3
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.7e-129 465.3 324 74.1
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.7e-129 465.3 316 73.1
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.9e-129 464.9 319 72.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 6.4e-129 464.5 318 73.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 8.3e-129 464.2 319 74.6
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.1e-128 463.8 319 72.7
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.4e-128 462.6 319 72.1
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.2e-128 462.2 317 73.2
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.2e-128 462.2 317 71.9
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 4.1e-128 461.8 317 71.9
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 4.1e-128 461.8 319 72.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 5.4e-128 461.5 324 71.9
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 5.4e-128 461.5 319 72.7
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 9.2e-128 460.7 319 73.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 72.7
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 72.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-127 460.3 317 72.9
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 73.0
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.2e-127 460.3 317 72.6
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.6e-127 459.9 320 73.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.6e-127 459.9 315 72.4
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.1e-127 459.5 321 73.2
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.1e-127 459.5 319 73.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.7e-127 459.1 319 72.7
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.7e-127 459.1 317 72.9
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 4.6e-127 458.4 319 73.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 4.6e-127 458.4 319 72.1
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 7.8e-127 457.6 321 72.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.8e-127 457.6 319 72.7
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 7.8e-127 457.6 321 71.7
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.3e-126 456.8 319 70.5
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.7e-126 456.4 319 72.1
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-126 456.1 319 72.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.3e-126 456.1 319 72.1
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 2.3e-126 456.1 319 73.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-126 455.3 313 71.9
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 8.6e-126 454.1 318 70.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.1e-125 453.8 320 71.6
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.5e-125 453.4 319 71.5
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.9e-125 453.0 321 70.7
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 3.3e-125 452.2 319 70.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 4.3e-125 451.8 319 70.2
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 5.6e-125 451.4 317 70.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 9.6e-125 450.7 319 70.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.2e-124 450.3 336 68.2
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.6e-124 449.9 319 71.2
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.6e-124 449.9 316 71.2
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.1e-124 449.5 316 70.9
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 2.8e-124 449.1 317 71.0
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 3.6e-124 448.7 316 71.5
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 4.7e-124 448.4 317 71.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 8.1e-124 447.6 319 70.5
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 8.1e-124 447.6 319 70.8
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.4e-123 446.8 318 69.5
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.4e-123 446.8 319 69.3
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 4.0e-123 445.3 319 70.2
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.0e-123 445.3 318 70.8
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 4.0e-123 445.3 319 69.3
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 8.9e-123 444.1 317 70.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.6e-122 442.6 317 70.7
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 6.4e-121 438.0 317 69.4
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.4e-120 436.0 320 69.7
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 4.2e-120 435.3 319 69.0
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.6e-119 431.8 337 65.0
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-117 427.2 289 74.0
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 3.3e-117 425.6 317 66.6
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.3e-117 425.6 306 69.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 6.9e-115 417.9 289 72.7
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 9.0e-115 417.5 265 77.4
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.9e-113 412.5 259 78.4
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.9e-112 409.8 318 66.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.1e-111 406.4 274 75.2
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.7e-110 403.3 340 62.9
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.9e-110 402.1 324 63.3
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 8.7e-110 401.0 329 62.9
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.3e-109 399.1 270 73.3
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 5.6e-109 398.3 327 62.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-103 380.2 315 62.9
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-102 377.1 313 62.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.9e-101 373.2 221 81.4
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 3.8e-97 359.0 331 56.8
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 4.9e-97 358.6 317 57.7
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.9e-97 358.6 230 72.6
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.1e-95 353.2 316 60.1
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 4.6e-95 352.1 309 61.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 6.0e-95 351.7 336 54.8
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 7.9e-95 351.3 231 69.7
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.8e-94 350.1 320 60.3
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.5e-88 329.7 321 58.3
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.4e-83 313.2 204 75.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 6.5e-81 305.1 222 68.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 5.5e-80 302.0 235 62.6
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.3e-78 296.6 328 52.4
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.6e-74 283.1 221 66.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.7e-73 280.4 162 82.7
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.0e-69 266.9 247 55.9
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 4.4e-69 265.8 316 47.2
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.3e-68 264.2 246 64.2
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 7.7e-66 255.0 150 81.3
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.7e-65 253.8 364 43.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 8.0e-63 245.0 171 71.9
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.5e-61 240.7 150 75.3
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.2e-55 221.1 178 64.0
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-54 216.9 133 78.2
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.7e-52 209.5 172 62.8
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.0e-49 201.4 296 41.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.6e-47 194.1 131 72.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.1e-47 192.2 112 82.1
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.6e-45 186.8 124 73.4
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-45 186.0 120 74.2
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-44 183.3 124 71.8
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.7e-44 183.0 124 71.8
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.3e-44 182.2 115 75.7
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-43 181.0 124 71.0
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-43 180.6 120 73.3
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.1e-43 179.5 120 73.3
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.7e-42 175.3 120 70.0
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.7e-42 175.3 132 65.9
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-40 168.7 93 87.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.0e-39 165.2 306 40.8
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.9e-38 161.8 195 48.7
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 9.2e-35 151.8 101 71.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.7e-34 150.2 101 70.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 6.6e-33 145.6 96 78.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 6.6e-33 145.6 96 78.1
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.2e-29 134.8 98 66.3
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.3e-28 128.6 146 51.4
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.2e-27 126.7 83 72.3
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 1.0e-25 121.7 153 49.7
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-21 106.3 62 83.9
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.8e-21 105.1 62 83.9
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.4e-19 99.4 74 70.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 9.5e-16 88.6 50 82.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 9.5e-16 88.6 50 82.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-15 87.0 50 80.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.8e-15 87.0 50 80.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.7e-15 86.3 47 80.9
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 8.1e-15 85.5 62 62.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.0e-14 83.2 100 47.0
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.2e-14 82.8 114 45.6
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-13 81.3 100 51.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-13 80.9 100 45.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 2.6e-13 80.5 77 54.5
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.6e-13 80.5 251 25.9
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.0e-10 69.3 91 45.1
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 1.0e-09 68.6 60 66.7
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 1.3e-09 68.2 91 48.4


User provided reference genes

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