Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 9.0e-171 603.6 327 100.0
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.0e-146 522.7 327 85.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.0e-145 520.4 324 86.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 5.3e-139 498.0 330 83.6
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.4e-131 473.4 327 80.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 3.5e-130 468.8 336 79.2
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.0e-129 467.2 334 79.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.9e-129 465.7 334 79.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 6.4e-116 421.4 336 73.2
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 7.0e-115 417.9 335 72.2
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.5e-112 410.2 330 70.9
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 3.2e-107 392.5 329 69.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 9.2e-107 391.0 331 67.1
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.7e-74 283.1 338 52.4
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.6e-72 274.6 329 51.1
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.9e-68 262.3 193 77.2
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 8.4e-68 261.5 336 48.8
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.1e-67 261.2 339 49.6
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.9e-67 260.4 363 48.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.3e-67 258.1 339 49.0
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 9.3e-67 258.1 335 50.1
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 6.0e-66 255.4 340 48.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 3.0e-65 253.1 336 49.1
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.9e-65 252.7 343 47.5
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.9e-65 252.7 329 48.3
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 3.9e-65 252.7 332 47.6
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.3e-64 249.6 335 48.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 4.3e-64 249.2 327 47.4
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 5.7e-64 248.8 343 49.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.7e-64 248.8 328 47.6
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 5.7e-64 248.8 342 49.1
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 7.4e-64 248.4 343 48.7
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 6.2e-63 245.4 331 48.0
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.1e-62 244.6 331 47.4
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.4e-62 244.2 336 47.6
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 1.4e-62 244.2 341 46.6
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.2e-61 241.1 334 46.4
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.0e-60 238.0 323 47.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-60 237.7 329 46.5
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.2e-59 233.0 339 45.7
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.2e-59 232.6 322 47.2
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 7.1e-59 231.9 328 47.9
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 2.1e-58 230.3 329 45.0
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.5e-58 229.6 339 45.4
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 4.6e-58 229.2 325 44.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 7.9e-58 228.4 322 45.7
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.3e-57 227.6 322 46.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.3e-57 226.9 333 45.9
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.9e-57 226.1 340 43.8
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 3.9e-57 226.1 304 47.4
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.9e-56 223.8 333 43.2
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.3e-56 223.0 338 45.0
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.3e-56 223.0 346 45.1
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.3e-56 222.6 347 43.2
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 9.7e-56 221.5 341 45.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.3e-55 221.1 325 44.0
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.7e-55 219.5 344 45.3
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 3.7e-55 219.5 334 43.7
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 4.8e-55 219.2 340 42.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.3e-55 218.8 337 44.5
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.1e-54 218.0 340 42.6
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 2.4e-54 216.9 326 45.4
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.1e-54 216.1 339 44.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.5e-53 214.2 347 43.2
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.0e-53 213.8 319 45.5
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 2.0e-53 213.8 341 41.9
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.6e-53 213.4 300 46.7
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.6e-53 213.4 337 42.4
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.7e-53 211.8 280 48.2
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 2.9e-52 209.9 380 42.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 8.5e-52 208.4 331 43.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.5e-51 206.8 335 43.3
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 4.2e-51 206.1 332 44.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 4.2e-51 206.1 302 43.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.2e-50 204.5 338 43.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-50 204.1 339 42.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.1e-50 203.8 341 41.3
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.1e-50 203.8 342 42.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.7e-50 203.4 323 41.2
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 4.6e-50 202.6 281 45.6
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 7.9e-50 201.8 335 41.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.9e-50 201.8 338 40.5
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.0e-49 201.4 331 42.9
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.0e-49 199.9 334 41.6
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 3.0e-49 199.9 338 42.9
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.9e-49 199.5 338 41.4
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.0e-48 197.2 338 42.3
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 2.5e-48 196.8 346 40.2
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.3e-48 196.4 335 40.3
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.3e-48 196.1 257 48.2
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 9.7e-48 194.9 345 41.4
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.2e-47 193.7 279 42.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 3.7e-47 193.0 334 43.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 6.3e-47 192.2 348 42.0
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 6.3e-47 192.2 328 42.1
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.8e-46 190.7 300 42.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 5.3e-46 189.1 504 33.1
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.0e-45 187.2 252 48.8
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.7e-44 184.1 342 39.2
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.1e-43 181.4 234 47.9
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.2e-43 179.5 304 40.5
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.6e-42 177.6 331 41.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 3.6e-42 176.4 342 38.3
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 4.7e-42 176.0 284 42.6
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.1e-42 175.6 317 39.1
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.0e-41 174.9 287 42.5
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-41 174.5 333 40.8
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 3.0e-41 173.3 349 37.8
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 2.6e-40 170.2 317 39.7
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.7e-39 167.5 292 38.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.8e-39 166.8 234 46.6
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.2e-39 165.2 290 42.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 9.1e-38 161.8 321 39.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.0e-36 158.3 298 37.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.7e-36 157.5 419 32.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.7e-36 157.5 297 39.7
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 5.0e-36 156.0 282 41.1
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 9.4e-35 151.8 335 36.4
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 2.1e-34 150.6 344 36.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 8.0e-34 148.7 299 37.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 8.0e-34 148.7 323 35.0
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.3e-33 147.1 250 40.8
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 5.2e-33 146.0 257 40.5
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.6e-29 133.7 342 33.0
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 5.0e-28 129.4 280 38.2
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 8.0e-26 122.1 280 37.1
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-23 114.8 284 32.7
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-23 114.8 230 36.1
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.4e-22 111.3 119 55.5
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.1e-22 110.2 129 55.0
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 7.0e-22 109.0 115 57.4
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 2.9e-20 103.6 113 55.8
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.5e-19 101.3 344 28.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.5e-19 100.5 121 50.4
BcaB05g21579 Brassica carinata HOM05D005253 ORTHO05D006058 5.5e-19 99.4 113 61.1
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.1e-18 95.9 90 55.6
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-17 94.4 191 34.6
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 5.7e-16 89.4 192 34.4
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-14 85.1 92 48.9
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.8e-14 84.3 98 46.9
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-12 77.8 126 39.7
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 9.5e-11 72.0 107 41.1
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 2.1e-10 70.9 87 47.1
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 4.7e-10 69.7 90 43.3
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 8.0e-10 68.9 89 44.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.0e-10 68.9 265 30.2
C02p03420 Brassica napus HOM05D055744 ORTHO05D042034 2.4e-06 57.4 45 71.1
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.4e-06 57.4 69 49.3


User provided reference genes

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