Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 3.9e-169 598.2 339 100.0
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 7.5e-144 514.2 338 84.0
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 8.3e-143 510.8 340 85.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.8e-142 509.6 339 85.3
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.0e-140 503.8 337 85.5
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.9e-140 502.3 381 74.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.1e-139 500.4 341 80.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-139 500.4 341 80.6
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.1e-139 500.4 341 80.6
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.2e-139 497.7 339 78.2
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-138 496.9 342 83.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-138 496.9 342 83.6
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.4e-137 493.4 340 81.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.9e-135 485.0 344 83.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.8e-134 483.0 343 82.8
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.6e-133 479.9 343 82.2
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.2e-130 470.3 372 76.9
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.3e-116 423.7 301 78.7
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.7e-114 415.2 348 67.0
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 6.2e-98 361.7 337 58.8
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 6.2e-98 361.7 338 58.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.6e-96 356.3 337 59.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 7.6e-96 354.8 340 60.0
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.3e-95 354.0 338 56.8
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 2.2e-95 353.2 340 58.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.4e-94 349.7 340 60.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 9.3e-94 347.8 340 58.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.5e-93 345.9 340 57.4
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.0e-92 342.8 340 57.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-91 340.5 340 57.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 3.3e-91 339.3 340 56.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 5.6e-91 338.6 340 58.5
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 9.6e-91 337.8 340 57.6
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.2e-90 335.1 335 57.9
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 8.1e-90 334.7 339 58.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.1e-89 332.8 346 56.1
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.3e-89 332.0 340 57.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.2e-88 330.9 339 51.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.8e-88 328.6 340 53.2
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-87 327.4 337 53.7
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.7e-87 327.0 340 53.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.9e-87 326.2 340 54.1
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.9e-87 325.5 340 54.1
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 6.4e-87 325.1 341 54.3
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.4e-86 323.9 342 55.8
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-86 323.9 336 58.9
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.2e-86 322.8 346 54.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.2e-86 322.8 339 53.4
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-85 320.9 340 52.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.6e-85 318.9 340 52.6
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 7.9e-85 318.2 339 51.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.0e-84 317.8 334 54.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-84 317.8 337 51.6
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.3e-84 316.6 339 51.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.0e-84 316.2 339 52.5
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 5.1e-84 315.5 339 51.6
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.5e-83 313.9 340 51.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-83 313.5 342 51.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.3e-83 312.4 338 52.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 9.6e-83 311.2 339 50.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.3e-82 310.8 339 54.0
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.8e-82 308.9 338 52.7
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.1e-81 307.8 335 52.8
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.4e-81 306.6 340 53.8
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.4e-81 306.6 334 52.1
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.4e-81 306.6 339 52.2
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 3.1e-81 306.2 335 51.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.9e-81 305.1 342 50.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.0e-81 304.7 340 51.5
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.5e-80 302.4 340 52.6
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.5e-80 302.4 340 50.9
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 4.5e-80 302.4 390 48.2
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 5.8e-80 302.0 340 49.4
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.6e-80 301.6 339 48.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.9e-79 299.7 339 48.4
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.4e-79 298.5 347 50.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.1e-78 297.7 361 51.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.9e-78 297.0 339 49.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.1e-78 295.0 337 53.1
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.6e-77 293.9 338 48.2
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.7e-77 293.1 340 51.5
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.9e-77 291.6 339 48.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-76 290.8 339 48.4
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.8e-76 290.4 339 48.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.8e-76 290.4 336 51.2
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.3e-76 290.0 291 55.0
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.9e-76 289.3 343 50.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 8.7e-76 288.1 343 52.2
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.5e-75 287.3 296 53.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.3e-75 285.8 337 49.9
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.3e-75 285.8 342 47.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 5.6e-75 285.4 339 51.3
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.6e-75 285.4 275 54.9
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 9.6e-75 284.6 341 53.4
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.6e-74 283.9 283 53.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.6e-74 283.9 338 50.6
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-74 283.5 349 47.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.1e-74 283.5 340 52.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-73 280.8 339 47.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.8e-73 280.4 338 50.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.1e-73 279.6 331 51.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-72 277.7 335 51.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.5e-72 277.3 335 51.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-72 277.3 351 50.1
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.5e-70 270.0 345 46.4
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.5e-70 270.0 348 50.0
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.1e-69 266.9 289 50.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.7e-69 266.5 376 47.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-68 264.2 346 43.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.9e-68 262.7 348 44.0
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.7e-68 261.5 348 43.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.5e-67 260.8 339 48.7
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.3e-67 259.6 307 47.9
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.8e-66 256.5 316 48.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.1e-65 252.7 294 49.3
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 5.3e-65 252.3 339 46.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.9e-65 251.9 331 47.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.6e-64 250.0 259 54.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 5.9e-64 248.8 343 44.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 5.9e-64 248.8 335 45.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-63 247.7 340 44.4
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.9e-63 246.5 335 44.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 6.5e-63 245.4 337 43.6
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 8.5e-63 245.0 225 58.7
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 8.5e-63 245.0 336 44.0
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.1e-62 244.6 339 44.2
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.5e-62 242.3 329 45.6
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 2.1e-61 240.4 330 44.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.6e-61 239.2 325 48.0
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 7.9e-61 238.4 330 44.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.1e-60 235.7 177 68.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 6.3e-58 228.8 255 51.0
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.0e-56 223.8 338 45.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.8e-55 219.5 240 51.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.2e-54 216.5 315 41.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.7e-53 213.4 325 43.1
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.3e-50 204.5 250 46.8
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.8e-50 203.4 341 39.9
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 4.8e-50 202.6 242 50.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.0e-48 197.2 334 39.8
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-47 194.5 162 59.9
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 8.5e-47 191.8 336 39.6
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-46 190.3 176 56.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.2e-46 189.5 161 63.4
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.9e-44 183.0 219 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.2e-40 171.4 243 42.0
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-39 168.3 211 53.6
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-39 167.9 211 54.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.2e-38 162.9 149 54.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.2e-36 156.0 165 53.9
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-35 154.8 211 47.4
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.7e-35 152.5 341 37.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.7e-34 149.8 127 59.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.2e-29 134.8 209 47.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-26 124.4 130 46.9
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.2e-26 124.0 128 48.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 4.5e-24 116.3 150 44.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.9e-23 113.6 98 59.2
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.8e-23 113.2 215 37.7
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-21 107.5 139 45.3
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.0e-20 103.6 239 35.6
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.2e-20 102.8 140 45.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-19 100.9 139 42.4
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.8e-18 97.1 103 48.5
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.2e-13 81.6 91 45.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.5e-11 74.7 60 60.0
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.4e-09 67.4 140 36.4
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.2e-09 67.0 59 59.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.2e-08 65.1 245 28.6
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 5.6e-06 56.2 44 68.2
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 9.5e-06 55.5 35 68.6


User provided reference genes

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