Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 4.7e-186 654.4 345 100.0
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.3e-180 636.3 345 97.1
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.8e-178 628.6 345 95.9
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.2e-178 627.5 345 95.4
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.2e-178 627.5 345 95.4
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 8.1e-178 627.1 345 95.1
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.1e-177 626.7 345 95.4
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.7
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.1
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.1
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.1
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.1
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.3e-177 625.5 345 95.1
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.8e-177 624.0 345 94.8
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.7e-175 618.2 357 91.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 5.4e-174 614.4 357 91.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.4e-166 589.7 345 88.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 3.2e-150 535.4 343 79.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.9e-149 530.8 343 78.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 7.9e-149 530.8 343 78.4
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-148 530.4 343 78.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 2.3e-148 529.3 343 79.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 5.1e-148 528.1 343 78.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 6.7e-148 527.7 343 79.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.9e-147 526.2 343 77.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.3e-147 525.4 343 78.1
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 7.4e-147 524.2 343 77.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 9.6e-147 523.9 343 78.1
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.1e-146 522.7 343 77.6
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.1e-146 522.7 343 77.6
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 76.5
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.8e-146 522.3 343 77.6
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 8.1e-146 520.8 343 76.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.1e-145 520.4 344 77.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.8e-145 519.6 343 78.4
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 5.3e-145 518.1 345 78.3
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 9.0e-145 517.3 343 76.4
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.2e-144 516.9 343 76.1
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.5e-144 516.5 343 76.7
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 7.6e-144 514.2 344 76.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 76.1
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 75.8
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 3.8e-143 511.9 344 76.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 4.9e-143 511.5 344 75.9
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 3.2e-142 508.8 344 75.6
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.2e-142 508.8 343 77.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.2e-142 508.4 343 75.8
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 5.5e-142 508.1 343 74.1
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.2e-141 506.9 343 75.8
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.2e-141 506.9 343 76.4
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.3e-140 503.4 341 74.8
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-140 502.7 343 75.5
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 5.1e-140 501.5 343 74.3
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.5e-139 500.0 345 76.5
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 5.6e-139 498.0 343 74.1
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 7.4e-139 497.7 341 73.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.3e-138 496.9 344 73.5
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.6e-138 496.5 343 73.5
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.6e-138 496.5 343 73.2
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 3.7e-138 495.4 343 74.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.8e-137 493.0 345 75.1
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.8e-137 493.0 346 73.1
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 3.1e-137 492.3 343 73.5
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 6.9e-137 491.1 343 72.6
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 9.0e-137 490.7 343 73.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.5e-136 490.0 337 73.6
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 4.5e-136 488.4 392 66.8
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.9e-135 485.7 335 75.8
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 2.9e-135 485.7 343 72.0
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.9e-135 485.7 343 70.6
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 3.8e-135 485.3 348 72.4
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.9e-135 485.0 343 72.9
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 4.9e-135 485.0 349 72.2
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.5e-134 482.6 343 71.4
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.2e-134 482.3 345 73.0
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.5e-134 481.5 343 71.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 7.1e-134 481.1 367 70.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.2e-133 480.3 336 70.8
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 3.5e-133 478.8 345 71.9
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.6e-133 478.4 345 72.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.0e-133 478.0 343 72.6
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.9e-132 475.3 341 71.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.9e-132 475.3 356 69.4
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.1e-131 473.8 325 73.8
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 5.7e-131 471.5 343 70.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 7.4e-131 471.1 343 72.3
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.6e-130 469.9 343 72.9
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.2e-127 459.5 413 61.5
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 5.0e-127 458.4 272 85.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 7.2e-126 454.5 308 73.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.1e-125 453.0 336 68.5
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.0e-124 449.1 306 74.5
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.1e-124 448.4 306 74.5
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 9.7e-123 444.1 344 65.7
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 4.8e-122 441.8 333 70.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.7e-119 433.3 306 71.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 5.0e-119 431.8 272 79.0
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.4e-118 430.3 400 59.2
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 3.9e-116 422.2 343 65.9
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 7.4e-115 417.9 343 64.7
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 2.8e-114 416.0 343 66.2
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.2e-111 406.4 293 72.0
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.2e-110 402.5 416 55.3
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.2e-110 401.4 343 63.0
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 4.4e-107 392.1 328 66.8
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-106 390.6 343 61.8
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.8e-105 386.7 292 70.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 3.5e-104 382.5 222 86.9
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 6.3e-98 361.7 384 53.6
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.2e-96 357.5 202 93.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.7e-96 356.3 343 58.0
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 7.7e-96 354.8 222 79.7
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-89 334.3 343 55.4
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 4.1e-89 332.4 246 70.3
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.0e-89 331.6 204 83.8
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.5e-83 313.9 387 51.2
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 6.6e-79 298.5 335 50.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 6.6e-79 298.5 343 49.9
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.6e-75 286.6 249 61.4
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.4e-73 280.8 169 82.2
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.2e-72 277.7 247 60.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 8.0e-69 265.0 299 47.5
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 7.5e-59 231.9 255 51.8
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 6.0e-56 222.2 163 74.2
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.0e-55 221.5 144 80.6
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.4e-49 201.1 144 70.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 6.0e-48 195.7 154 63.6
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 5.1e-47 192.6 238 50.0
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 2.4e-44 183.7 358 35.8
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 5.8e-43 179.1 342 34.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 9.9e-43 178.3 131 71.0
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.4e-41 173.7 182 53.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.2e-41 172.9 110 77.3
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.7e-40 170.2 323 35.6
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.3e-39 167.9 312 36.5
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 3.1e-36 156.8 130 63.1
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 9.9e-35 151.8 113 73.5
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 8.4e-26 122.1 74 81.1
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-22 111.3 93 60.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 2.6e-19 100.5 73 67.1
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.2e-18 97.4 104 51.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.5e-17 92.8 95 55.8


User provided reference genes

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