Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.4e-184 647.9 345 100.0
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 3.1e-145 518.8 300 92.0
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 8.7e-132 474.2 299 88.0
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 8.7e-132 474.2 299 88.0
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.5e-131 473.4 347 78.7
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.9e-131 473.0 300 85.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.1e-129 467.2 304 84.5
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 3.1e-129 465.7 354 76.8
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 7.2e-126 454.5 300 82.0
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.7e-125 452.6 267 87.3
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.8e-113 413.3 276 73.9
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.4e-113 412.9 281 79.4
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.4e-112 409.1 296 71.3
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 5.9e-112 408.3 296 70.9
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 5.9e-112 408.3 235 93.6
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 3.8e-111 405.6 314 66.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 8.5e-111 404.4 301 70.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.4e-110 403.7 314 72.3
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.4e-110 403.7 271 74.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.4e-110 403.7 307 70.0
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 3.6e-109 399.1 268 79.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.9e-109 397.9 295 73.9
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 3.3e-107 392.5 267 75.7
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 7.4e-107 391.3 298 69.1
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.3e-106 390.6 269 79.2
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 6.3e-106 388.3 268 73.5
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 5.3e-105 385.2 287 73.9
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 5.3e-105 385.2 287 73.9
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.6e-104 382.9 298 72.1
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 3.5e-104 382.5 271 70.5
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.5e-104 382.5 269 72.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 5.9e-104 381.7 281 68.0
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.3e-103 380.6 269 73.6
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.2e-103 379.8 315 69.2
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 2.9e-103 379.4 308 66.9
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.9e-103 379.4 295 65.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 6.5e-103 378.3 271 69.7
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 8.5e-103 377.9 271 69.7
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.1e-102 377.5 271 68.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.9e-102 376.7 264 72.7
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-102 375.9 271 70.1
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.5e-102 375.2 266 71.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 5.5e-102 375.2 300 71.7
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 5.5e-102 375.2 271 69.0
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.7e-101 372.9 275 68.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.7e-101 372.1 296 65.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.4e-100 370.5 266 70.7
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 4.0e-100 369.0 271 69.4
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.2e-100 368.6 268 69.0
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.2e-100 368.6 270 74.8
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 8.8e-100 367.9 275 73.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 8.8e-100 367.9 281 68.0
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.2e-99 367.5 275 69.5
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.5e-99 367.1 270 68.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.5e-99 367.1 344 62.5
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.0e-99 366.7 299 68.9
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.0e-99 366.7 270 70.4
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.4e-99 365.5 284 65.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 9.7e-99 364.4 270 69.6
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 9.7e-99 364.4 275 69.1
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.3e-98 364.0 268 70.9
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.3e-98 364.0 235 77.9
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.8e-98 362.8 288 66.7
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.7e-98 362.5 269 69.1
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 4.8e-98 362.1 295 63.4
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 8.2e-98 361.3 283 66.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.4e-97 360.5 288 69.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.8e-97 360.1 269 73.2
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 5.3e-97 358.6 274 67.2
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.2e-96 357.5 342 57.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.2e-96 357.5 270 73.0
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.2e-96 357.5 277 66.4
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.7e-96 356.3 267 68.9
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 5.9e-96 355.1 270 70.0
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.7e-96 354.8 277 70.8
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.7e-96 354.8 289 66.4
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-95 354.4 275 71.3
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.3e-95 354.0 269 68.0
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.7e-95 353.6 273 65.6
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 2.9e-95 352.8 289 66.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.8e-95 352.4 304 60.2
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 3.8e-95 352.4 276 65.2
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 5.0e-95 352.1 270 66.7
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 6.5e-95 351.7 277 65.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.6e-93 347.1 271 67.9
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.1e-93 346.7 270 68.1
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.1e-93 346.7 276 66.3
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.7e-93 346.3 270 66.7
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 8.0e-93 344.7 289 64.4
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.8e-92 343.6 314 59.6
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 8.8e-92 341.3 276 63.8
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.2e-91 340.9 296 62.8
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.6e-91 339.7 271 67.2
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.8e-87 325.9 274 64.6
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 8.5e-87 324.7 272 64.7
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.1e-86 324.3 271 66.1
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 9.8e-83 311.2 274 60.6
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.0e-81 305.1 211 72.0
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 9.2e-81 304.7 270 64.8
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.5e-78 296.6 271 58.3
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 6.1e-77 292.0 290 55.9
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.0e-76 289.3 226 66.4
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 4.4e-75 285.8 266 56.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 6.6e-71 271.9 264 54.9
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.4e-68 264.2 240 57.5
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 2.0e-67 260.4 295 51.9
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-64 251.1 186 71.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.6e-64 250.8 170 71.8
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 7.8e-64 248.4 172 72.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 8.1e-61 238.4 221 56.6
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 4.6e-56 222.6 299 43.5
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.1e-55 219.2 283 46.6
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 5.6e-54 215.7 192 60.4
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 2.2e-42 177.2 134 69.4
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 3.0e-39 166.8 185 53.0
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.3e-38 163.3 267 45.7
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.4e-28 131.3 81 92.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 4.5e-27 126.3 85 77.6
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.2e-26 124.0 85 76.5
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 8.4e-26 122.1 85 76.5
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.7e-24 117.1 117 57.3
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 2.0e-11 74.3 66 62.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-10 71.6 75 57.3


User provided reference genes

Program Settings