Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 7.1e-172 607.4 370 100.0
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 7.2e-124 448.0 374 75.9
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 6.8e-98 361.7 409 63.3
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 6.8e-98 361.7 409 63.3
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 6.8e-98 361.7 409 63.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 4.4e-97 359.0 379 67.5
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.1e-95 352.8 402 64.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 3.1e-95 352.8 375 68.5
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.6e-94 350.5 390 64.6
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 8.6e-93 344.7 405 64.4
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 8.0e-83 311.6 349 62.5
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.0e-82 311.2 349 62.5
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 7.5e-81 305.1 349 63.6
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.1e-74 284.6 426 54.7
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 3.1e-74 283.1 344 63.1
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 3.0e-69 266.5 341 60.1
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 4.4e-65 252.7 395 50.1
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 4.9e-64 249.2 340 58.8
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 3.8e-56 223.0 340 57.4
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 7.9e-46 188.7 387 42.4
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.0e-45 188.3 415 43.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 5.1e-45 186.0 399 38.6
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.5e-44 184.5 398 38.2
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.5e-44 183.7 396 38.4
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.3e-44 183.3 415 42.9
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 5.6e-44 182.6 422 38.2
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 3.6e-43 179.9 416 38.7
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 2.4e-42 177.2 123 73.2
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 6.9e-42 175.6 360 40.3
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 6.9e-42 175.6 352 38.9
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.2e-41 174.9 468 34.4
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.5e-41 174.5 454 33.3
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.5e-41 174.5 386 36.5
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 7.6e-41 172.2 478 33.3
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 2.9e-40 170.2 452 34.5
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 3.8e-40 169.9 393 41.5
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 4.9e-40 169.5 387 37.2
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 8.4e-40 168.7 516 32.8
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.4e-39 167.9 462 34.4
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 3.2e-39 166.8 469 31.3
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 4.2e-39 166.4 488 34.2
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 4.2e-39 166.4 378 43.4
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 7.1e-39 165.6 491 35.8
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 3.5e-38 163.3 491 31.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 3.5e-38 163.3 454 35.7
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 4.6e-38 162.9 452 37.8
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.0e-37 161.8 426 36.4
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 1.3e-37 161.4 366 38.5
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.8e-37 161.0 409 39.1
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 2.3e-37 160.6 423 36.2
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 5.1e-37 159.5 388 38.1
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 6.7e-37 159.1 458 33.6
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 1.1e-36 158.3 478 33.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.5e-36 157.9 415 37.3
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.5e-36 157.9 421 35.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.5e-36 157.9 429 35.9
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.9e-36 157.5 375 37.1
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 3.3e-36 156.8 418 34.9
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 5.6e-36 156.0 138 65.9
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 2.8e-35 153.7 407 35.9
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 8.1e-35 152.1 111 72.1
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 8.1e-35 152.1 408 35.5
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.1e-34 151.8 385 43.9
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 5.3e-34 149.4 402 42.8
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 5.3e-34 149.4 370 36.5
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 6.9e-34 149.1 414 35.0
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 6.9e-34 149.1 430 34.4
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.0e-33 147.5 448 36.6
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 2.0e-33 147.5 465 34.2
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 2.6e-33 147.1 138 65.2
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 2.6e-33 147.1 156 60.3
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 3.4e-33 146.7 409 42.3
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.3e-32 144.8 339 45.1
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.8e-32 143.3 126 64.3
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.9e-32 142.9 153 56.2
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 4.9e-32 142.9 119 65.5
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 4.9e-32 142.9 481 31.6
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 8.4e-32 142.1 138 60.1
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.4e-31 141.4 432 38.9
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.9e-31 141.0 136 58.8
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 2.5e-31 140.6 488 32.4
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 2.5e-31 140.6 389 39.8
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 3.2e-31 140.2 80 83.8
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 3.2e-31 140.2 413 33.9
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 4.2e-31 139.8 373 40.2
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.2e-31 139.8 378 32.5
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 4.2e-31 139.8 91 74.7
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 7.1e-31 139.0 139 59.0
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.6e-30 137.9 478 32.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.1e-30 137.5 400 36.5
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.7e-30 137.1 141 56.0
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 6.0e-30 136.0 325 36.9
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.3e-29 134.8 391 40.2
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.8e-29 134.4 390 33.3
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.8e-29 134.4 139 53.2
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 2.3e-29 134.0 135 56.3
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 3.0e-29 133.7 324 47.2
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 5.1e-29 132.9 511 29.2
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 1.5e-28 131.3 488 31.4
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 3.3e-28 130.2 172 47.7
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 4.3e-28 129.8 152 52.0
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 5.7e-28 129.4 341 37.8
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 7.4e-28 129.0 377 33.2
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.3e-27 128.3 113 62.8
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.6e-27 127.9 483 29.6
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.6e-27 127.9 143 55.2
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.8e-27 127.1 566 30.4
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.2e-27 125.6 132 53.8
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 4.1e-26 123.2 315 40.0
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.1e-26 123.2 143 51.0
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 1.3e-24 118.2 328 45.4
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 5.0e-24 116.3 141 49.6
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 2.5e-23 114.0 424 31.4
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 2.5e-23 114.0 334 34.1
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 7.2e-23 112.5 324 46.0
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.6e-22 111.3 134 48.5
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.6e-22 111.3 134 48.5
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.7e-22 110.5 109 54.1
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 4.6e-22 109.8 396 33.3
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 6.1e-22 109.4 148 47.3
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.0e-21 107.1 137 52.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 8.7e-21 105.5 118 55.1
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-20 105.1 81 64.2
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 4.3e-20 103.2 62 77.4
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 5.0e-16 89.7 340 30.9
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 5.0e-16 89.7 339 34.5
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 3.6e-14 83.6 107 47.7
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 4.6e-14 83.2 401 27.4
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 5.1e-13 79.7 102 52.9
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 4.3e-12 76.6 414 28.0
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 7.4e-12 75.9 45 73.3
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 7.4e-12 75.9 55 63.6
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.2e-11 74.3 146 37.7
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 3.7e-11 73.6 81 55.6
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 1.8e-10 71.2 89 50.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 2.0e-09 67.8 35 88.6
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 2.0e-09 67.8 35 88.6
BcaC06g35789 Brassica carinata HOM05D018474 ORTHO05D006717 3.2e-07 60.5 80 50.0
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 3.6e-06 57.0 81 43.2


User provided reference genes

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