Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.9e-227 791.2 419 100.0
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 9.4e-197 690.3 421 87.4
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 2.1e-196 689.1 423 88.7
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.7e-196 688.7 422 87.7
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 4.4e-194 681.4 421 87.2
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.7e-193 679.5 421 87.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 3.8e-190 668.3 448 82.4
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.9e-189 666.0 422 86.0
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 4.2e-189 664.8 424 85.4
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 9.4e-189 663.7 422 84.8
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.6e-188 662.9 422 85.3
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 9.5e-181 637.1 457 79.0
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 7.3e-173 610.9 421 80.0
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 3.0e-171 605.5 439 76.3
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 6.6e-166 587.8 421 80.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 6.0e-159 564.7 431 75.9
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 7.8e-151 537.7 432 69.2
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 5.3e-123 445.3 432 57.9
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 9.6e-117 424.5 443 54.9
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 1.3e-116 424.1 436 54.8
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.4e-115 419.9 433 54.7
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.0e-114 416.8 436 54.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 5.8e-114 415.2 431 55.2
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 1.7e-113 413.7 430 54.7
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.2e-113 413.3 432 53.9
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 8.4e-113 411.4 433 53.6
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 7.1e-112 408.3 427 53.4
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 2.7e-111 406.4 433 54.0
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 7.9e-111 404.8 436 53.0
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.6e-108 397.1 433 52.7
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 1.1e-107 394.4 448 52.7
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 2.4e-107 393.3 421 53.4
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 4.1e-107 392.5 435 53.1
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.9e-106 388.7 407 53.8
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.7e-105 387.1 405 52.6
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 2.2e-105 386.7 379 55.9
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 4.2e-104 382.5 388 55.7
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 7.9e-103 378.3 437 54.7
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 8.7e-102 374.8 388 54.9
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 5.7e-101 372.1 424 52.6
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 7.4e-101 371.7 442 50.7
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 3.7e-100 369.4 441 51.2
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 1.8e-99 367.1 435 51.7
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.1e-99 366.3 442 50.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.1e-99 366.3 453 49.7
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 3.1e-99 366.3 385 53.0
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 5.3e-99 365.5 428 50.2
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.5e-98 364.0 444 51.1
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 9.4e-96 354.8 390 52.8
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 2.3e-94 350.1 390 51.3
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 6.7e-94 348.6 412 48.5
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.5e-93 347.4 402 49.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.6e-93 346.7 438 47.3
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.6e-93 346.7 436 47.0
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 2.6e-93 346.7 390 50.3
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 7.4e-93 345.1 436 46.3
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.2e-92 343.6 402 48.0
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 4.1e-91 339.3 372 53.5
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 5.3e-91 339.0 405 48.9
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.5e-90 337.4 437 44.4
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.4e-90 336.3 413 47.7
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 4.5e-90 335.9 400 48.2
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 7.7e-90 335.1 413 48.7
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.3e-89 334.3 402 47.8
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.7e-89 334.0 412 46.8
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 2.2e-89 333.6 372 51.9
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 2.2e-89 333.6 426 46.9
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 3.8e-89 332.8 385 50.6
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 6.5e-89 332.0 434 47.5
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 1.1e-88 331.3 372 51.6
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.2e-88 329.7 408 49.3
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 8.0e-87 325.1 516 42.8
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 1.4e-86 324.3 391 48.3
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.3e-84 317.8 431 44.8
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.4e-83 314.3 430 44.0
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 7.2e-80 302.0 402 45.5
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 7.2e-80 302.0 440 43.0
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 3.7e-76 289.7 301 54.8
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 3.1e-75 286.6 383 45.2
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 2.7e-74 283.5 383 44.1
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 3.5e-74 283.1 383 45.4
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.6e-71 273.1 294 53.7
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.7e-71 272.7 294 54.1
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 8.8e-70 268.5 318 50.6
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.6e-69 266.9 419 41.8
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.4e-67 260.4 390 40.8
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 7.0e-67 258.8 402 40.5
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 9.1e-67 258.5 294 52.7
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.7e-66 256.9 365 46.0
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 4.5e-66 256.1 544 36.4
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 6.1e-63 245.7 369 41.7
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.3e-62 243.8 216 56.9
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 1.5e-61 241.1 308 46.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 6.3e-60 235.7 249 51.8
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.4e-59 234.6 346 41.3
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.3e-56 223.0 200 59.5
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 1.7e-52 211.1 427 35.8
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.4e-51 207.2 410 38.3
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 4.1e-51 206.5 282 44.3
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.3e-41 174.1 402 32.6
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 4.3e-40 169.9 376 33.2
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 2.8e-39 167.2 376 33.2
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 6.4e-36 156.0 198 44.4
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 1.0e-33 148.7 403 29.8
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.5e-32 144.8 101 68.3
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 7.3e-32 142.5 373 29.2
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.2e-31 141.7 268 36.6
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.9e-27 127.9 139 52.5
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.2e-26 125.2 94 63.8
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.0e-25 122.1 329 35.9
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 4.3e-24 116.7 406 28.1
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 8.1e-23 112.5 130 49.2
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 6.9e-22 109.4 123 52.8
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 3.9e-17 93.6 167 40.1
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.1e-14 84.0 111 46.8
BolC3t12644H Brassica oleracea HOM05D006045 ORTHO05D007678 3.8e-12 77.0 65 70.8
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.6e-10 71.6 231 30.7


User provided reference genes

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