Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 5.1e-246 854.0 433 100.0
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 8.7e-238 826.6 433 96.3
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 4.9e-233 810.8 430 94.4
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.1e-232 809.7 433 94.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.3e-230 802.0 430 93.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.1e-229 799.7 433 93.3
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 7.4e-229 797.0 430 92.6
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.6e-226 788.5 429 92.8
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.9e-225 785.0 475 85.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 8.4e-225 783.5 474 84.8
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.7e-223 778.5 415 94.0
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 6.3e-220 767.3 473 84.1
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.3e-213 745.0 415 89.9
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 2.0e-210 735.7 442 83.9
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.6e-186 656.4 429 75.5
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 6.5e-185 651.0 430 74.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 5.5e-184 647.9 428 74.5
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.2e-183 646.7 430 74.7
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.6e-183 646.4 430 73.5
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.6e-183 645.2 429 74.4
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.6e-181 639.0 429 73.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 5.7e-181 637.9 430 73.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 5.7e-181 637.9 430 72.6
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.7e-180 636.3 429 73.2
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 71.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 72.8
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 4.1e-179 631.7 430 71.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 7.0e-179 630.9 430 72.1
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.6e-178 629.8 430 71.6
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.5e-178 628.6 432 70.6
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 5.9e-178 627.9 430 70.9
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.9e-178 627.9 430 71.6
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.3e-177 626.7 432 72.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.8e-177 625.2 430 72.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 8.6e-177 624.0 432 70.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.9e-176 622.9 430 70.5
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 3.3e-176 622.1 430 69.8
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 5.5e-176 621.3 429 70.4
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.1e-175 619.4 429 70.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.1e-175 619.4 430 69.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.6e-175 618.6 430 70.7
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.6e-175 618.6 432 69.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 4.7e-175 618.2 430 71.6
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 8.0e-175 617.5 432 70.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.4e-174 616.7 430 70.0
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.8e-174 616.3 430 70.0
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.8e-174 616.3 431 71.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 8.9e-174 614.0 429 69.9
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.0e-173 612.8 430 69.5
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 7.5e-173 610.9 431 70.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 4.9e-172 608.2 456 68.4
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.2e-170 603.6 431 70.3
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.6e-170 603.2 433 68.6
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.0e-170 602.8 430 68.8
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.0e-170 602.8 430 69.3
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.5e-170 602.1 433 68.8
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-170 602.1 430 69.5
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.5e-170 602.1 429 68.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.9e-170 601.3 427 70.3
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 7.8e-170 600.9 430 68.6
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.0e-169 600.5 430 67.9
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.3e-169 600.1 432 69.2
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.9e-169 598.6 429 67.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 5.0e-169 598.2 431 67.7
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 6.6e-169 597.8 432 68.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.3e-168 595.5 433 68.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.3e-168 595.1 426 68.8
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 7.3e-168 594.3 431 67.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 2.1e-167 592.8 470 64.5
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 4.7e-167 591.7 430 68.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.0e-166 590.5 430 67.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.3e-166 589.3 428 67.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 6.8e-166 587.8 339 89.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.4e-163 580.1 426 66.2
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.6e-162 576.6 433 67.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.8e-159 565.8 427 64.9
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-159 565.8 435 66.7
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-159 565.8 434 66.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.1e-158 563.9 510 58.0
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.0e-158 562.0 430 64.0
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.4e-157 558.5 519 56.5
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.3e-156 557.0 430 65.3
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.7e-156 556.6 341 84.8
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.1e-155 552.0 432 65.3
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-153 547.4 430 64.7
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.1e-153 545.0 430 64.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.7e-151 538.5 444 61.5
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.3e-150 536.2 364 72.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 2.3e-150 536.2 430 63.5
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.1e-147 525.4 432 63.0
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.3e-145 520.4 421 62.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.5e-144 516.9 380 67.9
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.6e-144 515.0 380 67.6
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 2.4e-142 509.6 379 67.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 8.9e-142 507.7 376 67.8
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.5e-141 506.9 382 68.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-140 503.8 420 63.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.5e-136 489.6 448 58.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 7.3e-136 488.0 362 68.5
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.8e-134 483.4 726 40.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 7.6e-133 478.0 433 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.2e-125 454.1 431 53.1
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 6.4e-124 448.4 694 40.5
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 9.3e-123 444.5 429 51.5
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.2e-119 431.8 316 68.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 4.5e-117 425.6 298 71.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 4.2e-115 419.1 431 49.0
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.1e-112 411.0 437 49.2
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 7.6e-109 398.3 283 69.3
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 6.5e-100 368.6 350 52.3
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 5.7e-88 328.9 221 73.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.1e-78 298.1 219 68.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.1e-78 298.1 247 62.8
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.6e-66 256.5 235 60.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 4.0e-65 253.1 429 34.7
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.5e-64 248.8 161 76.4
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-59 233.4 283 48.4
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 8.0e-58 228.8 215 58.6
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 9.8e-56 221.9 159 69.2
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.5e-53 213.4 134 78.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.6e-53 213.0 430 35.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.6e-52 208.8 131 72.5
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 4.7e-50 203.0 200 60.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 1.8e-49 201.1 193 61.1
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.6e-43 179.5 142 61.3
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 8.1e-42 175.6 140 62.1
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-36 158.3 149 50.3
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 5.6e-35 152.9 317 32.8
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.8e-24 116.3 120 50.0
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 7.1e-22 109.4 94 58.5
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.2e-21 108.6 52 90.4
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.0e-20 105.5 146 46.6
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.1e-20 103.2 54 94.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 4.4e-16 90.1 68 61.8
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.9e-15 87.4 79 53.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 3.8e-15 87.0 68 61.8
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 4.9e-15 86.7 68 60.3
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.8e-10 70.9 85 40.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.1e-09 68.9 43 74.4
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 3.1e-09 67.4 66 51.5
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 3.4e-08 63.9 37 78.4
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.4e-07 59.7 46 56.5


User provided reference genes

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