Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 3.3e-192 675.2 439 100.0
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 7.0e-126 454.9 370 77.8
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 7.2e-123 444.9 370 82.4
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 8.8e-121 438.0 371 81.9
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 7.0e-118 428.3 371 79.2
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 1.1e-107 394.4 345 77.1
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 4.7e-106 389.0 368 67.4
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 2.3e-105 386.7 364 68.4
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.6e-104 383.3 368 67.4
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.6e-98 364.0 317 72.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 4.7e-98 362.5 317 66.2
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 5.2e-97 359.0 317 65.9
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.0e-80 303.9 411 59.1
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 4.3e-59 233.0 384 47.9
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 5.6e-59 232.6 427 45.9
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.3e-58 231.5 427 44.3
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.3e-58 231.5 368 48.6
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.1e-57 228.4 420 45.5
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.1e-57 228.4 386 50.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.2e-56 224.9 323 47.1
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.2e-56 224.9 420 45.2
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 4.5e-56 223.0 238 58.0
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-55 221.5 420 45.5
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.9e-55 220.3 410 46.1
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 2.9e-55 220.3 228 57.9
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 2.9e-55 220.3 416 44.0
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.8e-55 219.9 423 43.5
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.4e-55 219.2 418 42.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.4e-54 218.0 417 44.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 5.4e-54 216.1 409 45.2
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 5.4e-54 216.1 423 44.4
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 7.1e-54 215.7 414 43.7
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.2e-53 214.9 409 44.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 2.7e-53 213.8 414 43.5
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.3e-52 211.5 407 44.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.0e-52 210.3 414 43.5
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.0e-52 210.3 420 43.6
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.9e-52 209.9 337 43.9
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-51 207.6 420 43.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.3e-51 206.8 237 55.3
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 7.4e-51 205.7 405 42.7
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 7.4e-51 205.7 431 41.3
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 9.6e-51 205.3 240 53.8
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.3e-50 204.9 408 44.6
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.6e-50 204.5 236 53.8
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.6e-50 204.5 427 44.0
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.6e-50 204.5 407 43.0
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 2.8e-50 203.8 398 44.5
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 3.7e-50 203.4 412 43.2
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 6.2e-50 202.6 222 54.1
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 6.2e-50 202.6 393 44.8
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.1e-49 201.8 332 45.8
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.4e-49 201.4 416 42.3
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.4e-49 200.7 235 54.0
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.0e-49 199.9 431 42.5
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 5.3e-49 199.5 385 46.2
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 5.3e-49 199.5 242 56.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 5.3e-49 199.5 235 52.8
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 5.3e-49 199.5 398 44.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.9e-49 199.1 414 40.8
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 9.0e-49 198.7 229 53.3
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.0e-48 197.6 293 46.4
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 2.0e-48 197.6 419 42.7
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 3.4e-48 196.8 418 42.6
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 3.4e-48 196.8 422 43.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 5.8e-48 196.1 415 41.9
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.7e-47 194.5 332 43.7
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 4.9e-47 193.0 326 43.9
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 6.5e-47 192.6 328 44.5
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.1e-46 191.8 432 43.8
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.5e-46 190.7 232 50.9
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 2.5e-46 190.7 375 45.3
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 4.2e-46 189.9 389 42.7
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 4.2e-46 189.9 296 43.9
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 4.2e-46 189.9 232 49.6
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 2.1e-45 187.6 252 49.2
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.5e-45 186.8 314 48.7
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.3e-44 184.1 314 42.0
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 5.1e-44 183.0 237 50.2
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.6e-42 177.9 406 40.6
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.6e-42 177.9 381 42.3
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 8.2e-42 175.6 207 52.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.4e-41 174.1 272 43.8
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 6.9e-41 172.6 390 42.1
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 9.0e-41 172.2 385 43.6
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.2e-40 171.8 340 43.8
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.5e-40 171.4 381 42.0
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 7.6e-40 169.1 367 43.1
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.8e-39 166.8 232 51.7
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.4e-38 164.9 207 50.2
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 7.2e-38 162.5 380 42.4
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.2e-37 161.8 379 42.0
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.2e-37 161.8 228 48.2
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-37 161.4 228 48.7
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 2.7e-37 160.6 389 42.2
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 2.7e-37 160.6 330 40.6
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-36 158.3 400 40.5
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-36 157.1 400 39.8
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 3.0e-36 157.1 363 39.9
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 5.1e-36 156.4 429 34.3
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 6.7e-36 156.0 229 43.7
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 8.7e-36 155.6 403 41.9
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 2.5e-35 154.1 380 41.1
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 3.3e-35 153.7 364 36.0
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 5.7e-35 152.9 235 45.5
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 9.7e-35 152.1 373 41.6
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.6e-34 151.4 229 43.7
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 3.7e-34 150.2 318 38.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 3.1e-33 147.1 382 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.2e-32 145.2 233 44.2
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.2e-32 145.2 328 40.2
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 5.9e-32 142.9 319 36.7
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 8.5e-31 139.0 401 36.7
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.6e-29 134.8 398 36.2
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 4.6e-29 133.3 210 41.0
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.1e-28 129.8 105 66.7
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.1e-27 128.6 340 35.0
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.8e-23 113.6 321 31.2
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.1e-21 107.8 267 34.8
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 3.9e-20 103.6 237 35.9
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 7.0e-17 92.8 88 52.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 5.9e-16 89.7 139 46.8
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 2.7e-13 80.9 61 67.2
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 4.7e-13 80.1 93 62.4
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 6.7e-12 76.3 105 51.4
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 7.5e-11 72.8 49 71.4
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.2e-10 71.2 365 31.8
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.4e-09 67.8 113 43.4
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 3.2e-06 57.4 199 31.2
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.2e-06 57.0 131 37.4
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.2e-06 57.0 225 36.9
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 9.4e-06 55.8 136 33.8


User provided reference genes

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