Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.0e-233 811.6 450 100.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 8.5e-204 713.8 452 88.7
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.4e-201 706.4 450 89.6
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.3e-199 699.9 455 88.8
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 4.1e-198 694.9 455 88.1
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 7.7e-197 690.6 460 86.7
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 7.7e-197 690.6 460 86.7
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.6e-188 661.0 438 87.0
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 9.5e-187 657.1 448 85.7
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 4.7e-186 654.8 458 82.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.5e-181 638.6 435 83.7
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.7e-180 636.3 450 82.9
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.5e-179 632.5 450 82.7
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 4.0e-177 625.2 459 77.3
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 2.1e-173 612.8 461 76.4
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.2e-159 566.2 456 75.4
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 3.3e-147 525.8 474 67.3
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.7e-135 486.9 461 68.1
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.1e-134 484.2 322 86.6
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 5.1e-124 448.7 449 64.6
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-122 443.7 449 63.9
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.1e-117 426.8 468 54.9
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.6e-117 426.0 451 62.3
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 6.1e-117 425.2 449 63.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.0e-116 424.5 383 62.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 6.7e-116 421.8 463 59.8
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.5e-115 420.6 465 58.7
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 8.2e-114 414.8 449 58.6
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.8e-113 413.7 463 55.1
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.4e-112 409.5 463 55.9
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 3.4e-112 409.5 457 54.7
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.9e-111 406.4 463 55.7
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 5.0e-111 405.6 455 61.8
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.9e-110 403.7 481 55.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.5e-110 402.1 393 66.2
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.6e-109 400.6 452 56.6
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 7.9e-109 398.3 378 60.1
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.8e-108 397.1 468 59.6
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.3e-108 396.7 472 51.5
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 5.1e-108 395.6 458 53.1
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 7.4e-107 391.7 462 55.0
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 9.7e-107 391.3 465 54.8
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.7e-106 390.6 460 54.3
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.7e-106 389.4 414 56.8
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 6.3e-106 388.7 455 54.3
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.1e-105 387.9 422 55.5
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.4e-105 387.5 461 53.8
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.8e-105 387.1 447 60.6
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 2.4e-105 386.7 456 53.7
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.4e-105 386.7 472 51.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 4.1e-105 386.0 443 53.3
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 4.1e-105 386.0 454 58.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 9.1e-105 384.8 422 55.2
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.2e-104 384.4 465 52.3
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 1.2e-104 384.4 466 53.0
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.5e-104 384.0 461 54.2
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 3.5e-104 382.9 415 56.6
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 3.5e-104 382.9 411 62.5
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 1.3e-103 380.9 460 54.6
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.7e-103 380.6 392 55.6
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.7e-103 380.6 441 51.0
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.9e-103 379.8 466 54.7
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 2.9e-103 379.8 461 51.8
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 6.5e-103 378.6 404 56.9
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 8.5e-103 378.3 409 55.7
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.1e-102 377.9 428 54.0
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.5e-102 376.7 378 56.3
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.5e-102 375.6 377 58.9
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 2.7e-101 373.2 402 55.2
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.6e-101 372.9 454 51.8
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 3.6e-101 372.9 452 56.9
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 3.6e-101 372.9 488 52.5
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 3.0e-100 369.8 456 50.4
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 5.2e-100 369.0 460 54.1
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 5.7e-99 365.5 429 57.6
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.7e-98 364.0 456 54.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 8.2e-98 361.7 478 51.9
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 7.0e-97 358.6 407 54.3
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.2e-96 357.8 428 51.9
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.2e-96 357.8 455 52.3
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 4.5e-96 355.9 430 58.4
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 7.7e-96 355.1 322 65.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 2.2e-95 353.6 455 55.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 5.5e-94 349.0 456 52.6
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.7e-93 346.7 437 50.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 7.5e-91 338.6 527 47.1
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 2.9e-87 326.6 323 65.0
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.2e-86 322.8 379 51.7
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.6e-83 313.5 441 46.7
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.4e-83 313.2 462 46.1
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 7.5e-83 312.0 386 49.5
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.8e-82 310.1 402 49.0
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 4.1e-81 306.2 400 52.5
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 4.1e-81 306.2 363 52.9
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.2e-80 304.7 321 57.0
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 2.0e-80 303.9 452 43.4
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 2.7e-80 303.5 357 49.3
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 4.5e-80 302.8 323 59.4
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.0e-79 301.6 353 59.5
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.5e-78 297.7 421 49.4
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 7.2e-78 295.4 406 47.3
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.5e-78 295.0 421 49.2
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.8e-76 290.8 431 48.5
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.7e-74 284.3 317 60.9
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.1e-73 281.6 309 55.0
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.5e-72 276.6 490 45.1
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 7.3e-70 268.9 473 46.7
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.6e-69 267.7 216 65.7
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.1e-69 265.8 602 38.2
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.1e-69 265.8 602 38.2
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.2e-67 261.5 310 51.9
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 3.4e-67 260.0 620 35.0
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.3e-66 258.1 499 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.2e-64 251.5 376 47.9
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.7e-64 250.4 464 40.9
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 3.5e-64 250.0 334 56.3
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.8e-61 240.4 332 58.1
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.7e-61 239.6 202 61.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 9.8e-59 231.9 456 39.7
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.2e-56 224.9 375 42.9
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 3.4e-51 206.8 239 50.6
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.4e-49 201.4 131 84.0
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 3.2e-49 200.3 301 43.2
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.0e-47 193.7 116 80.2
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 4.7e-45 186.4 364 50.0
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 7.6e-43 179.1 99 83.8
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 4.9e-42 176.4 357 37.8
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.2e-37 159.5 326 45.7
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.8e-36 157.9 181 42.5
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.1e-30 138.7 335 41.5
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 4.5e-27 126.7 172 38.4
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.1e-25 122.1 67 85.1
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.5e-22 111.7 74 75.7
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 9.6e-22 109.0 260 37.7
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 8.1e-21 105.9 333 33.9
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.8e-20 104.8 64 76.6
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 6.9e-20 102.8 66 78.8
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 9.0e-20 102.4 201 40.3
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 1.7e-18 98.2 156 46.8
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.9e-18 96.7 142 47.2
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.5e-18 96.3 142 47.2
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.3e-14 84.0 51 74.5
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 3.7e-13 80.5 47 76.6
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 3.1e-12 77.4 75 49.3
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 7.9e-08 62.8 138 25.4
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.7e-06 56.6 52 55.8


User provided reference genes

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