Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.4e-286 987.6 494 100.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.4e-270 934.1 494 95.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.4e-269 930.2 489 94.7
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-268 928.3 497 93.4
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.4e-268 928.3 491 94.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 4.1e-268 927.5 497 93.4
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 4.1e-268 927.5 497 93.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 9.2e-268 926.4 494 92.9
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-267 925.6 494 92.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.7e-267 924.9 494 93.3
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-265 918.7 495 92.9
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 7.3e-265 916.8 494 92.5
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.5e-265 916.4 494 92.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 9.5e-265 916.4 495 92.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 4.7e-264 914.1 506 91.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-263 912.9 505 90.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.8e-263 912.1 497 91.8
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-263 911.8 493 91.7
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.2e-262 909.4 495 92.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.2e-261 905.2 494 91.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.7e-259 898.3 494 90.9
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.0e-258 894.8 490 92.0
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.2e-255 884.0 491 90.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.4e-254 880.9 493 90.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.9e-254 879.8 497 89.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-248 861.7 488 88.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.3e-239 830.9 492 84.1
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.9e-229 798.5 527 78.4
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.0e-223 778.1 493 78.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.0e-223 778.1 497 78.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 5.5e-220 767.7 484 78.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.7e-219 765.4 489 77.5
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.9e-217 759.2 497 76.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.3e-217 758.4 499 76.0
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.3e-216 756.5 489 76.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-216 756.5 498 75.9
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.1e-216 755.7 491 77.2
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.1e-215 753.4 493 75.5
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-215 753.4 496 75.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.4e-215 752.3 497 76.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.0e-214 749.2 496 74.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.0e-214 749.2 496 74.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 7.6e-214 747.3 490 75.9
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 7.6e-214 747.3 493 76.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-213 746.5 498 75.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.9e-213 745.3 485 76.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 8.5e-213 743.8 488 74.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.1e-212 743.4 500 74.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.9e-212 742.7 485 75.9
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.2e-212 740.7 495 75.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 9.3e-212 740.3 493 75.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-211 740.0 491 73.7
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-211 739.2 495 75.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.1e-211 739.2 489 74.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.7e-211 738.8 490 75.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.6e-211 738.4 495 74.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 7.9e-211 737.3 484 76.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-210 736.5 490 74.5
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.3e-210 735.7 491 74.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.0e-210 735.3 485 74.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.9e-210 734.9 478 76.2
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.1e-210 734.6 490 74.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.1e-210 734.6 495 75.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.1e-210 734.6 491 74.5
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 6.7e-210 734.2 496 74.4
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.5e-209 733.0 492 74.0
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 3.3e-209 731.9 485 75.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.3e-209 731.5 484 75.4
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.3e-209 731.5 484 75.4
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 4.3e-209 731.5 493 74.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 7.4e-209 730.7 492 74.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 9.7e-209 730.3 491 73.5
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.8e-208 728.0 497 73.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.8e-208 728.0 490 73.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.8e-208 728.0 490 73.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 6.3e-208 727.6 490 73.5
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-207 726.5 478 75.1
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.8e-207 726.1 509 71.5
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 6.9e-207 724.2 490 75.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 9.1e-207 723.8 492 73.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.5e-206 723.0 480 74.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.4e-206 721.8 482 74.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 7.7e-206 720.7 480 73.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 6.5e-205 717.6 487 72.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-204 716.8 500 71.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 5.5e-204 714.5 492 73.2
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 9.4e-204 713.8 523 70.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.4e-201 704.9 482 72.2
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.7e-200 703.0 490 72.2
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.7e-200 703.0 480 72.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.1e-199 700.3 483 72.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.1e-199 700.3 483 72.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.1e-199 698.7 523 68.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.7e-197 693.0 490 69.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.0e-197 691.4 486 71.2
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-196 690.3 496 70.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.9e-194 681.8 497 68.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.7e-194 681.0 499 67.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.1e-193 680.2 487 69.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.0e-193 679.5 481 69.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.8e-191 672.9 493 70.8
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.2e-189 666.0 486 67.3
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 2.2e-189 666.0 452 72.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.5e-188 661.4 488 66.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.1e-187 659.4 495 66.1
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.7e-187 659.1 486 67.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.6e-187 658.7 517 65.8
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 9.7e-185 650.6 488 65.8
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.3e-184 650.2 583 58.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 8.2e-184 647.5 570 60.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 8.2e-184 647.5 487 66.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.4e-183 646.7 483 66.9
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.8e-183 646.4 487 68.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.7e-182 642.5 500 68.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-179 633.3 485 66.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 4.7e-179 631.7 500 62.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.5e-177 626.7 498 61.4
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.4e-177 625.2 497 66.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.7e-177 624.8 486 64.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 7.5e-177 624.4 481 66.3
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.1e-175 620.5 490 66.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 9.1e-175 617.5 478 65.9
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.0e-173 611.7 488 64.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.6e-171 605.5 362 85.6
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.4e-169 598.6 401 73.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.8e-166 587.8 504 62.9
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.6e-161 572.8 503 58.8
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 7.8e-158 561.2 378 74.6
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.7e-157 560.1 450 61.1
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-157 559.3 300 91.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 4.3e-156 555.4 494 58.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.0e-150 536.6 357 75.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 6.6e-149 531.6 549 54.8
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-148 530.8 399 67.4
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-146 524.2 394 69.0
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.6e-145 519.6 356 73.6
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-145 519.2 347 76.7
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.1e-140 504.2 393 67.2
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.7e-128 463.8 357 67.8
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.2e-127 459.5 471 52.7
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.3e-122 442.2 304 73.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.0e-118 428.7 402 58.2
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-114 417.9 283 74.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.5e-113 414.1 278 75.5
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-113 414.1 275 76.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.2e-87 326.6 233 70.8
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.7e-86 322.8 463 39.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-80 304.7 247 66.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.0e-78 295.4 188 77.7
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.0e-74 282.3 181 74.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 5.5e-71 272.7 205 69.8
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 8.0e-70 268.9 138 97.1
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.5e-63 248.1 201 63.2
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.1e-54 216.1 234 52.1
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 5.2e-53 213.0 144 72.2
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 7.5e-52 209.1 253 47.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 6.3e-51 206.1 153 69.3
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.8e-50 204.5 126 77.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 5.9e-49 199.5 134 73.9
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-46 189.9 265 46.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-41 174.9 114 71.9
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.1e-38 164.5 123 67.5
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.0e-37 160.2 114 68.4
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 9.8e-36 155.6 94 75.5
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 9.8e-36 155.6 94 75.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 3.7e-35 153.7 146 52.7
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 4.6e-25 120.2 63 92.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.6e-25 120.2 69 82.6
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.3e-23 113.6 66 81.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 9.5e-23 112.5 72 75.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-21 108.2 91 63.7
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 4.0e-21 107.1 102 58.8
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 6.8e-21 106.3 67 76.1
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-20 105.5 65 80.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.9e-20 102.4 65 76.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-19 101.7 65 83.1
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.9e-19 100.9 65 75.4
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.8e-17 92.8 77 64.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 6.6e-16 89.7 181 35.4
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.4e-12 77.0 48 66.7
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 9.3e-10 69.3 37 89.2
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 2.7e-09 67.8 36 88.9
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 2.7e-09 67.8 36 88.9
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 3.5e-09 67.4 48 68.8
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-07 61.6 48 72.9


User provided reference genes

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