Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.6e-300 1033.1 535 100.0
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.6e-270 935.6 543 89.0
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.0e-248 863.2 539 83.7
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-247 859.8 532 85.3
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.3e-247 858.2 540 83.7
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.5e-243 843.6 540 83.5
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.0e-239 832.4 539 80.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.4e-239 831.2 529 83.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 4.8e-238 827.8 551 81.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-237 826.6 551 81.1
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 3.7e-222 775.0 551 77.9
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 9.8e-215 750.4 535 74.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-178 630.6 514 65.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.6e-175 619.4 521 63.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.3e-174 617.1 510 64.3
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.4e-173 611.7 523 60.6
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.6e-172 610.1 526 62.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-171 607.1 508 63.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.7e-171 606.7 522 60.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.7e-171 606.7 507 62.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.9e-171 605.5 525 60.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.1e-171 605.1 505 62.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.3e-170 602.1 539 59.9
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.6e-170 601.7 511 62.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.2e-169 598.2 508 62.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-168 597.4 512 62.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.4e-168 597.0 518 60.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.4e-167 592.4 504 61.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.5e-167 592.0 512 61.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 9.9e-167 590.9 542 58.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.9e-166 589.3 520 60.4
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.9e-166 589.3 515 61.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 3.8e-166 589.0 515 61.4
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.4e-166 588.2 499 62.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.4e-165 587.0 524 60.1
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.9e-165 586.6 518 59.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.2e-164 583.9 552 57.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 7.9e-164 581.3 506 61.3
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.3e-163 580.5 538 59.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.9e-163 578.9 555 56.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.1e-162 577.4 522 58.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-162 577.4 522 58.4
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.9e-162 576.6 519 59.7
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.5e-162 576.2 552 57.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.3e-162 575.9 518 58.5
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 7.4e-162 574.7 533 59.7
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.1e-161 573.2 541 56.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 4.8e-161 572.0 490 62.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.1e-161 571.2 516 60.7
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.8e-160 570.1 547 56.9
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.8e-160 570.1 533 57.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 9.0e-160 567.8 521 58.3
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 3.4e-159 565.8 544 56.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.6e-159 564.7 522 56.9
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 9.9e-159 564.3 512 57.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.9e-158 562.8 514 57.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 8.4e-158 561.2 602 52.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.4e-157 560.5 520 57.7
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.2e-157 559.3 521 57.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.5e-157 558.5 518 56.9
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.5e-157 558.5 519 58.0
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.2e-156 557.4 526 58.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.6e-156 557.0 511 58.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-156 556.6 511 57.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.1e-156 556.6 511 58.3
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.1e-156 556.6 497 57.5
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.8e-155 553.5 519 58.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.3e-155 553.1 446 64.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 3.0e-155 552.7 519 57.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.1e-154 550.8 555 53.9
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.9e-154 550.1 561 54.2
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.5e-154 549.7 558 54.1
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.4e-154 548.1 555 55.3
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.8e-153 546.2 513 57.5
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.8e-153 545.4 529 57.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.2e-153 545.0 562 53.6
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 6.2e-153 545.0 558 53.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.0e-152 542.3 563 52.4
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-151 540.4 429 65.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.6e-151 539.7 355 72.1
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.7e-150 537.0 557 54.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.5e-150 535.0 357 70.9
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.4e-149 533.9 357 70.9
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 5.5e-149 531.9 499 57.3
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.1e-149 531.6 357 70.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.9e-147 525.8 540 53.1
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.3e-146 522.7 516 55.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.7e-146 521.9 515 56.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 7.4e-146 521.5 467 60.2
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 9.7e-146 521.2 550 52.2
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.3e-145 518.5 439 66.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.4e-144 516.5 590 51.5
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.9e-144 515.0 509 55.2
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-142 510.4 533 53.7
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.4e-141 507.3 473 57.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.9e-141 506.9 541 51.9
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-140 504.2 524 53.1
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.0e-139 501.1 435 60.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-139 501.1 512 52.7
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 8.8e-139 498.0 516 54.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.5e-138 497.3 558 48.4
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 9.7e-138 494.6 362 66.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.3e-137 494.2 362 66.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.4e-136 490.0 519 51.6
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 5.3e-136 488.8 562 47.3
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.4e-135 486.1 502 51.4
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 5.5e-133 478.8 504 50.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.6e-132 476.1 487 52.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.1e-130 471.1 300 74.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.8e-129 466.5 472 52.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.3e-126 457.6 544 46.5
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.9e-126 456.4 522 47.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 6.5e-126 455.3 529 48.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 8.0e-124 448.4 527 46.9
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 8.0e-124 448.4 504 48.2
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.2e-121 440.3 516 49.6
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.8e-120 437.2 314 64.6
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.0e-118 429.1 322 64.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-117 427.9 444 54.7
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 7.2e-117 425.2 535 45.6
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 9.4e-117 424.9 529 49.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.7e-116 422.5 380 54.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-116 421.8 536 45.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-116 421.8 536 45.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.3e-115 420.2 365 55.9
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 5.2e-115 419.1 411 52.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.5e-114 417.5 383 54.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 7.5e-114 415.2 553 44.1
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 9.7e-114 414.8 553 43.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.3e-113 414.5 580 43.4
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 4.8e-113 412.5 544 44.5
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.3e-113 412.1 350 57.1
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.2e-110 403.7 348 56.3
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.6e-108 397.5 470 48.7
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.3e-107 393.7 499 48.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.8e-107 392.1 287 62.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-106 391.0 398 50.8
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-106 391.0 398 50.8
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 5.7e-106 389.0 460 46.3
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-104 384.4 555 42.3
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.4e-104 384.4 555 42.3
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.0e-102 378.3 506 43.7
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.5e-101 372.5 301 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.8e-99 367.5 514 40.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.1e-96 358.2 406 48.0
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.6e-94 348.6 229 69.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 8.9e-91 338.6 301 59.1
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.8e-90 335.9 456 42.3
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.8e-90 335.1 209 74.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.0e-88 328.9 209 72.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 3.6e-84 316.6 396 48.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 5.4e-80 302.8 300 49.7
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.8e-60 237.3 530 34.0
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.8e-52 210.7 524 33.0
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 7.6e-50 202.6 326 42.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 7.1e-48 196.1 163 57.1
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.3e-48 195.7 284 45.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.5e-45 188.3 501 32.1
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.4e-40 171.8 271 36.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 5.5e-40 169.9 122 64.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.5e-40 169.9 276 40.6
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 8.7e-38 162.5 103 69.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.1e-36 157.9 134 57.5
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.7e-33 148.3 258 41.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.9e-33 146.7 78 84.6
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-25 122.1 67 80.6
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.9e-25 120.9 86 67.4
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.1e-23 114.8 107 51.4
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 6.1e-23 113.2 65 78.5
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.3e-21 107.1 93 57.0
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-18 99.0 89 60.7
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.1e-13 82.4 223 30.9
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.4e-13 79.7 212 33.0
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.5e-10 70.5 112 44.6
MSTRG.10530 Avicennia marina HOM05D005151 ORTHO05D006322 2.1e-07 61.6 350 23.1


User provided reference genes

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